BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2782.p (390 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 775 0.0 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 340 9e-95 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 82 1e-16 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 76 4e-15 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/390 (94%), Positives = 381/390 (97%) Query: 1 MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGISSWLAHNKEQTKANLFATLPATA 60 MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQG++SWLAHNK++TKANLFATLPATA Sbjct: 6 MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATA 65 Query: 61 GPNAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKITEKDGSLYGRGTCDMKGFIATALALV 120 GP+AGSTEGGIVLSGHTDVVPVDGQKWDTDPFK+TEKDG+LY RG+CDMKGFIATALALV Sbjct: 66 GPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALV 125 Query: 121 PEFLTMPRVKPIHLAFSYDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 180 PE+L MPRVKPIHLAFS+DEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG Sbjct: 126 PEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 185 Query: 181 INVFACKVHGKSAHSSLTPHGCNAIEHAARLICAIRDFADGYKANGPYDQAFDVPFSTMT 240 INVFACKVHGKSAHSSLTP GCNAIEHAARLICAIRDFADGYKANGPYDQ FDVPFSTMT Sbjct: 186 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT 245 Query: 241 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSVGDIQAQIDQYIAQVLLPRMRAEFPDARVE 300 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSV DIQAQID+YIA+VLLP+MR EFPDARVE Sbjct: 246 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVE 305 Query: 301 IDNFAGSPALEAAEQAAITELVRALTGDRETRKVAYGTEAGLFQQIGIPTIVCGPGDIGN 360 IDNFAGSPALEA EQAAITELVRALTGDR+TRKVAYGTEAGLFQQIGIPTIVCGPGDIGN Sbjct: 306 IDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIGN 365 Query: 361 AHKPNEFVALAQMERCEQFLRKLGKSLQAA 390 AHKPNEFV LAQME CEQFLRKLGKSLQAA Sbjct: 366 AHKPNEFVTLAQMEHCEQFLRKLGKSLQAA 395 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 340 bits (873), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 175/382 (45%), Positives = 235/382 (61%), Gaps = 10/382 (2%) Query: 3 TRQWLE---TLVAFDTTSRNSNLELITTVRDSLQQQGISSWLAHNKEQTKANLFATLPAT 59 TRQ L+ TL+ F+T SR SNL LI VRD L++ G + L ++ E+ KANLFATL Sbjct: 13 TRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATLG-- 70 Query: 60 AGPNAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKITEKDGSLYGRGTCDMKGFIATALAL 119 +AG G V SGHTDVVPV GQKWDTDPF DG L+GRG CDMKGFIA +A Sbjct: 71 ---DAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMAR 127 Query: 120 VPEFLTMPRVKPIHLAFSYDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHK 179 +P P+H +FSYDEE+GC+G +L ++ + I+ G ++GEPT M V+AHK Sbjct: 128 LPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 187 Query: 180 GINVFACKVHGKSAHSSLTPHGCNAIEHAARLICAIRDFADGYKANGPYDQAFDVPFSTM 239 G + C VHG +AHSS G N+I+ AA + IR+ A + +G D FDVP+S++ Sbjct: 188 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVPYSSI 247 Query: 240 TTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVGDIQAQIDQYIAQVLLPRMRAEFPDARV 299 T GG A N IP+ EF +E R LPG+ ++ ++ Y Q +LP+MR + R+ Sbjct: 248 ATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRIDGVQGRI 307 Query: 300 EIDNFAGSPAL-EAAEQAAITELVRALTGDRETRKVAYGTEAGLFQQIGIPTIVCGPGDI 358 E + P + A+ +T +R L +R RKV +GTE GLF Q G+P ++CGPGDI Sbjct: 308 EFETLTSYPGMCTPADDPLVTSALRILGSER-ARKVGFGTEGGLFGQAGMPAVICGPGDI 366 Query: 359 GNAHKPNEFVALAQMERCEQFL 380 +AHKPNEFV L Q+ RCE+F Sbjct: 367 AHAHKPNEFVTLEQLARCERFF 388 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 94/337 (27%), Positives = 144/337 (42%), Gaps = 28/337 (8%) Query: 65 GSTEGGIVLSGHTDVVPVDG-QKWDTDPFKITEKDGSLYGRGTCDMKGFIATALALVPEF 123 G+ + +V +GHTDVVP +KW + PF+ T ++G LYGRG DMK IA + EF Sbjct: 57 GTAQPLVVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSIAAMVVACEEF 116 Query: 124 LTM-PRVK-PIHLAFSYDEEIGCI-GAPVMLEEIVKRGIKVDGCVVGEPTSMNVV----- 175 P K I + DEE I G V+ + RG ++D C+VGEPTS + Sbjct: 117 TAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIK 176 Query: 176 VAHKGINVFACKVHGKSAHSSLTPHGCNAIEHAARLICAIRDFADGYKANGPYDQAFDVP 235 +G V G H + N I AA + + A+ + A Y +P Sbjct: 177 NGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAAPALAEL--VAEQWDAGNEY----YLP 230 Query: 236 FSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVGDIQAQIDQYIAQVLLPRMRAEFP 295 S +N G A N IP + FR +V +Q ++ +L + E+ Sbjct: 231 TSWQISNIHGGTGASNVIPGEVMIDFNFRFSTASTVEGLQQRV-----HAILDKHGLEY- 284 Query: 296 DARVEIDNFAGSPAL--EAAEQAAITELVRALTGDRETRKVAYGTEAGLF-QQIGIPTIV 352 D + + G P L A+++ ++ TG GT G F QI I Sbjct: 285 DLKWTV---GGLPFLTPRGDLSDALSKAIKDETGLDTELSTTGGTSDGRFIAQICPQVIE 341 Query: 353 CGPGDIGNAHKPNEFVALAQMERCEQFLRKLGKSLQA 389 GP + + HK +E + + ++ + RK ++L A Sbjct: 342 FGPPN-DSIHKIDEHIEVRYIDPLKNIYRKTLENLLA 377 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 141/353 (39%), Gaps = 43/353 (12%) Query: 47 QTKANLFATLP-ATAGPNAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKITEKDGSLYGRG 105 Q+ NL P GP + L+ H DVVP G+ W DP+ DG +YGR Sbjct: 74 QSITNLIVRRPYGDGGPT-------LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRA 125 Query: 106 TC----DMKGFIATALALVPEFLTMPRVKPIHLAFSYDEEIGCIGAPVMLEEIVKRGIKV 161 D ++ AL E + + L F+YDEE G + P L E + + Sbjct: 126 AAVSKSDFASYLFATRAL--EAVGASLRGGVELHFTYDEEFGGLLGPGWLLE---QKLTR 180 Query: 162 DGCVVGEPTSMNVVVAHKGINVFACKVHGKSAHSSLTPHGCNAIEHAARLICAIRDFADG 221 V+ S NVV AH F VHG++ H S+ G +A++ A ++ AI G Sbjct: 181 PDYVLAAGFSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPG 240 Query: 222 YKANGPYDQAFDVPFSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVGDIQAQIDQY 281 K P TM +I GG N +P + R +P ++A + + Sbjct: 241 LKEIRSAIPGITHP--TMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKL 298 Query: 282 IAQVLLPRMRAEFPDARVEIDNFAGSPALEAAEQAAITELVRALTGDRETRKV------- 334 I + A P RVEI + +LV +L R R+V Sbjct: 299 IEDAV-----AGLPGIRVEIRRLLLA--RALRPLPGHEKLVESLL--RNAREVMGETLTT 349 Query: 335 ---AYGTEAGLFQQIGIPTIVCGPGDI----GNAHKPNEFVALAQMERCEQFL 380 A T+A L+ + GIP ++ G G NA + +E +AL + + + + Sbjct: 350 NGSALYTDARLYGEQGIPVVLFGAGPRTLMESNAKQADENLALDDLRKATKVV 402 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,220,618 Number of extensions: 50209 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 4 Length of query: 390 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 303 Effective length of database: 1,207,925 Effective search space: 366001275 Effective search space used: 366001275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)