BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2781.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspiril...   444   e-126
gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspiril...   122   2e-29

>gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  444 bits (1142), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/268 (85%), Positives = 244/268 (91%)

Query: 1   MWVDTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYAL 60
           MWVDTHCHLDAGEFG+RSA +ADEAAQAGVR IVIPAIAR NF++V QLARE+GNAVYAL
Sbjct: 1   MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL 60

Query: 61  GIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFA 120
           GIHPLYVP+++ +DL +LREAIAAALDDPLFVGIGEIGLDFFVPALKE PLREKQEFFFA
Sbjct: 61  GIHPLYVPSSQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA 120

Query: 121 EQLKLARDFDLPVLLHVRRSQDIILKYLRRIRVPGGIAHAFNGSHQQAENFVELGLHLGF 180
           EQLKLARDF LPVLLHVRRSQDIILK+LRRIRVPGGIAHAFNGS QQA  FVELGLHLGF
Sbjct: 121 EQLKLARDFALPVLLHVRRSQDIILKHLRRIRVPGGIAHAFNGSDQQARTFVELGLHLGF 180

Query: 181 GGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAVLAELRQ 240
           GGAMTFPR+LQIRRLAAELPLSSIVLETDAPDI+PAW HP+ NTPDQIPRIG VLAELR 
Sbjct: 181 GGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQVLAELRG 240

Query: 241 LSLTEVATTTTANAQVALPRLACSGLKL 268
           L   EVA  TTANA+ ALPRLA SGL  
Sbjct: 241 LPQQEVAAATTANARAALPRLASSGLSF 268


>gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 259

 Score =  122 bits (307), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 134/259 (51%), Gaps = 15/259 (5%)

Query: 1   MWVDTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYAL 60
           M++D+HCH++  +   R   +  + A+  V   +  ++   +F QV  LA +  +   ++
Sbjct: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPHVYASV 60

Query: 61  GIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFA 120
           G+HP Y  T EP+  +++R A     D P  V IGE GLD++   L+ D   E Q   F 
Sbjct: 61  GVHPDYEDTPEPSVDELVRLA-----DHPRIVAIGETGLDYY--RLQGD--LEWQRERFR 111

Query: 121 EQLKLARDFDLPVLLHVRRSQDIILKYLRRIRVP------GGIAHAFNGSHQQAENFVEL 174
             ++ +R    P+++H R + +  ++ LR            G+ H F  S + A+  +EL
Sbjct: 112 THIRASRATGKPLIIHTRAASEDTIRILREEGASPQAGGAAGVMHCFTESQEVADAAIEL 171

Query: 175 GLHLGFGGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAV 234
           G ++ F G +TF  +  ++++A  +PL  +++ETD+P ++P      TN P  +  +G  
Sbjct: 172 GFYISFSGIVTFKSAKDLQQVARAIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEF 231

Query: 235 LAELRQLSLTEVATTTTAN 253
           +A+LR  S  EVA  T+ N
Sbjct: 232 IADLRGTSAAEVARQTSEN 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 801,917
Number of extensions: 33952
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)