BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2772.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312076|ref|YP_003776168.1| signal transduction histidine k... 208 3e-55 gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine ... 103 1e-23 gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 90 1e-19 gi|300311886|ref|YP_003775978.1| multi-sensor signal transductio... 88 7e-19 gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite s... 64 1e-11 >gi|300312076|ref|YP_003776168.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 356 Score = 208 bits (530), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 124/216 (57%), Positives = 152/216 (70%), Gaps = 2/216 (0%) Query: 19 PLPDPSQVQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLA-QEKHPWLAQADYA 77 PLP P+ IRE+ER RIARDLHD+LG L+G+GMALG+L+EQLA Q LA+AD A Sbjct: 140 PLPPPATAIHIREQERERIARDLHDDLGGVLAGVGMALGRLQEQLAAQGLAAPLAEADEA 199 Query: 78 QQLLQQASQGMERIIDDLHPPIVEFGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEF 137 +QLLQQA M IID+LHPPIVEFGLVDAL WQCR R+ L C+L C TL+ ED F Sbjct: 200 RQLLQQAMASMHSIIDELHPPIVEFGLVDALQWQCRQIQREYRLHCQLDCPPTLEQEDRF 259 Query: 138 VVLSLLRILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPR-GGRIG 196 ++L LLRILREA +NAARH A + V L++ + RL++ +ADDG G P A R G Sbjct: 260 LILGLLRILREAASNAARHGRASALRVDLRMRQARLEMQIADDGCGIAPLHAKEVAPRHG 319 Query: 197 QGLANMRQRAQALGGSLVLEARAGGGTLVRLEMPVA 232 GL NMR+RAQALGG L +EA GG ++R +PVA Sbjct: 320 HGLRNMRERAQALGGELFIEAGQDGGVVIRTLIPVA 355 >gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 677 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 10/212 (4%) Query: 24 SQVQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQ 83 + ++ +REEE+ IAR+LHD +GA L+ L M L + + L ++ W + Q L++ Sbjct: 463 NHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEK-WADRKVRMQGLMKS 521 Query: 84 ASQGMERIIDDLHPPIVE-FGLVDALTWQCRHFSRQSGLECKLQC---DCTLQPEDEFVV 139 RI +L P ++ FGL A++ Q ++G+ C D + E E Sbjct: 522 LVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEME--- 578 Query: 140 LSLLRILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQGL 199 +++ R+L+E LNN +HA A ++V L +DE+ + L+V DDG G +R R GL Sbjct: 579 IAIYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIPEER--RDNHKTYGL 636 Query: 200 ANMRQRAQALGGSLVLEARAGGGTLVRLEMPV 231 +R+RA GG + + + G G L+ + +P+ Sbjct: 637 RGLRERATFFGGEVDIRSTPGKGALITISLPI 668 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 108/213 (50%), Gaps = 17/213 (7%) Query: 25 QVQRIREEERSRIARDLHDELGAQLSGLGM----ALGQLR---EQLAQEKHPWLAQADYA 77 +V R +EEER+R++RDLHD + L + + AL +L EQ A + + A Sbjct: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARAGFEKTATQI 300 Query: 78 QQLLQQASQGMERIIDDLHPPIVE-FGLVDALTWQCRHFSRQSGLECKLQCDCTLQPED- 135 +L + + RI DL P I++ GL AL C + +G ++ + Q +D Sbjct: 301 NGVLAE----VRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQADDG 356 Query: 136 ----EFVVLSLLRILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPR 191 + V L RI +EAL N ARHA A I+VRL L L V D+G GFD + Sbjct: 357 ATLPDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLGQVDD 416 Query: 192 GGRIGQGLANMRQRAQALGGSLVLEARAGGGTL 224 R G GL NMR+R +A+GG L +++ G ++ Sbjct: 417 HSRHGIGLRNMRERIEAVGGELGIDSSPAGTSI 449 >gi|300311886|ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 87.8 bits (216), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 7/212 (3%) Query: 24 SQVQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQ 83 S+V ++E ER +AR LHD++G L+ L + L +++ + E D +L Q Sbjct: 262 SRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKKMGSLEGPSLQNGIDIVTAVLAQ 321 Query: 84 ASQGMERIIDDLHPPIVE-FGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEFVVLSL 142 + + DL PP ++ GL+ AL S+ + + + + + + Sbjct: 322 ----VRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWFESSGHDEQLHHDIENTA 377 Query: 143 LRILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQ--GLA 200 RI++EA+ N RHA ++I V++ +++ LS+ DDG GFD +RA G GL Sbjct: 378 FRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLL 437 Query: 201 NMRQRAQALGGSLVLEARAGGGTLVRLEMPVA 232 NM +RA +GGS+ + + G GT + + +PVA Sbjct: 438 NMEERAVLVGGSMEITSAPGAGTEIVMHLPVA 469 >gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 650 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 106/202 (52%), Gaps = 8/202 (3%) Query: 32 EERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQ-ADYAQQLLQQASQGMER 90 ER+ +A+ LHD + L+ L + + L + LA+++ + A + +Q+ + + Sbjct: 445 NERNLLAQGLHDSIAQGLNFLNLQVQMLEDSLARDRLDEIRDIAPLLRTGVQENYEDVRE 504 Query: 91 IIDDLHPPIVEFGLVDALTWQCRHFSRQSGLECKLQCDCT---LQPEDEFVVLSLLRILR 147 ++ + + + L + RQSGL+ ++ L PE + L +L IL+ Sbjct: 505 LLLNFRTRLQDSNLDSEMRKALDKLQRQSGLQGQITLTGDGPPLAPEQQ---LQVLFILQ 561 Query: 148 EALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQGLANMRQRAQ 207 EAL+N +HA A+ +++ + + + +++V+DDG GF + A G GL M++RA+ Sbjct: 562 EALSNIRKHARAQQVQISVD-NRQDFRMTVSDDGHGFTLESARAKGLEHVGLRIMQERAE 620 Query: 208 ALGGSLVLEARAGGGTLVRLEM 229 LG +L ++++ G GT + L + Sbjct: 621 RLGANLEIDSQPGHGTRIALTL 642 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 644,500 Number of extensions: 23135 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 5 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)