BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2771.p (148 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 205 1e-54 gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 96 1e-21 gi|300311884|ref|YP_003775976.1| two component response regulato... 91 6e-20 gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 89 1e-19 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 77 5e-16 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 205 bits (522), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/138 (79%), Positives = 121/138 (87%) Query: 1 MSRPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCL 60 MSRPSILMVDPSPESVELARF LWR+KLDCAFGWFEDAE A +SLF+P A HP LPCL Sbjct: 1 MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60 Query: 61 ILLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDA 120 ILLEPRLPRMEG++LLHMLR+ HTRALPV+MFATS D+ADA R+ AAGANDYLVKPVDA Sbjct: 61 ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120 Query: 121 REFMELINQTVAHWLPLA 138 R FMEL++QTV WLP A Sbjct: 121 RAFMELVSQTVRRWLPGA 138 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 95.5 bits (236), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 80/147 (54%), Gaps = 5/147 (3%) Query: 1 MSRPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCL 60 MS PSI+M+DPSPE+ ELARF+LWR+ L CAF +D A L S T P L Sbjct: 13 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCAT-PSL 71 Query: 61 ILLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDA 120 ILLE + +G++LL LR+ H PV++F S+D + AGA YL KP+D Sbjct: 72 ILLESDMECGDGLELLRELRASSHLAEAPVVVF-PSHDTEGEREALDAGATAYLPKPIDG 130 Query: 121 REFMELINQTVAHWLPLAPSREADAPT 147 + + + V W ++ EA AP Sbjct: 131 ERYARCVVEMVERWCDVS---EAAAPV 154 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 90.5 bits (223), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/129 (41%), Positives = 72/129 (55%) Query: 6 ILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCLILLEP 65 I++VD SPE EL R +L KL WF DAE A E F D P LILL+ Sbjct: 8 IILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLILLDL 67 Query: 66 RLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDAREFME 125 LP M G D L +++S T +PV+MF++S D+ D +S+ GAN Y+VK D +EFM Sbjct: 68 NLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMG 127 Query: 126 LINQTVAHW 134 + T +W Sbjct: 128 TVVDTGIYW 136 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 1/127 (0%) Query: 1 MSRPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCL 60 M P ILM++ + E+VELARF+LWRS C W+++A+ A++ L H +D LP L Sbjct: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDA-RLPDL 59 Query: 61 ILLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDA 120 ILL+P + GVD + +++ TR++PV++F S + AGA+ YL+KP A Sbjct: 60 ILLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETA 119 Query: 121 REFMELI 127 ++M+ + Sbjct: 120 PQYMQAV 126 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 77.4 bits (189), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 9/136 (6%) Query: 4 PSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCLILL 63 P IL++D +++E ARF+LWRS L C WF+DAE A SL + D P LILL Sbjct: 8 PRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQ-PTLILL 66 Query: 64 EPRLPR-MEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGAND---YLVKPVD 119 +PR R EG +LL L P +P+++F S +D AA ++ Y KP Sbjct: 67 DPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSD----FAAEQDNRIWYAAKPAR 122 Query: 120 AREFMELINQTVAHWL 135 ++MEL+ + V L Sbjct: 123 PADYMELVTRCVQQRL 138 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 489,541 Number of extensions: 18696 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 9 Length of query: 148 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 71 Effective length of database: 1,255,275 Effective search space: 89124525 Effective search space used: 89124525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)