BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2770.p (549 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis tra... 857 0.0 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 375 e-105 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 343 2e-95 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 342 4e-95 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 328 8e-91 >gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 548 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/550 (87%), Positives = 507/550 (92%), Gaps = 3/550 (0%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNQLKGYLADS 60 MTITKRLI+TLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLN LKGYLADS Sbjct: 1 MTITKRLIITLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 Query: 61 RLAGYRLSVFANLADKSELQKAVDAANKSLDEEFAHYERDLIFDDQDRALIQADQANIEV 120 RLAGYRLSVFANL+DKS LQKAVD ANK LDEEFAHYERDLIFD++DRALIQAD+ANIE Sbjct: 61 RLAGYRLSVFANLSDKSGLQKAVDTANKLLDEEFAHYERDLIFDEKDRALIQADKANIEA 120 Query: 121 YRKALVPFFAAAYANDMEGVRASLQAGTPLAISAAAAKKGFEDHILIGRKKIDAIKLESD 180 YRKALVPFFAAAYANDM+GVRA+LQAGTPLAISAAAAKKGFEDHILIGRK ID IK ESD Sbjct: 121 YRKALVPFFAAAYANDMDGVRATLQAGTPLAISAAAAKKGFEDHILIGRKMIDTIKQESD 180 Query: 181 EAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLSRPVPVER 240 EAYAFALRTMIAV+VVAVLLTG+LG+Q++R VI SLG+IQ TFEHVSQTLDLSRPVPVER Sbjct: 181 EAYAFALRTMIAVVVVAVLLTGLLGLQVVRSVIRSLGKIQHTFEHVSQTLDLSRPVPVER 240 Query: 241 MDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAAALEES 300 MDEIG TAAAFNKLLARIV+VV+TTR+STDSVTVAARQIAAGNADLSARTEQQAAALEES Sbjct: 241 MDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALEES 300 Query: 301 ASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRKIVDII 360 ASSLEQLTSVVLQNT+NARQANELAQSASHIASQGGDVVRQVVDTMNSIN SSRKIVDII Sbjct: 301 ASSLEQLTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINESSRKIVDII 360 Query: 361 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV 420 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV Sbjct: 361 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV 420 Query: 421 DKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQMDQGTQ 480 KVGSGSKLVEQAG+TMS+IVDSVQRVT IV IA+AS EQSAGISQVNQAI+QMDQGTQ Sbjct: 421 SKVGSGSKLVEQAGTTMSDIVDSVQRVTVIVGDIANASEEQSAGISQVNQAIAQMDQGTQ 480 Query: 481 QNAALVEEAAAAAQALQGQAEKLESVVAVFQLGSRTALPVRSVDVTPATNRLPDAAAPVN 540 QNAALVEEAAAAA ALQ QAE LESVVAVF+L R + + + RLP A+P Sbjct: 481 QNAALVEEAAAAAHALQQQAETLESVVAVFKLEGRLNGSIPVIQAPASAARLP--ASPAA 538 Query: 541 PQALE-MEEF 549 QA +EEF Sbjct: 539 RQAEPALEEF 548 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 375 bits (962), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/536 (42%), Positives = 334/536 (62%), Gaps = 11/536 (2%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNQLKGYLADS 60 ++I RL + + ++ + + + ++ R ++P + SL+ + + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 61 RLAGYRLSVFANLADKSELQKAVDAANKSLDEEFAHYERDLIFDDQDRALIQADQANIEV 120 R+A +R D+ ++ + ++A K +++ YE++ + D D+ L++A + + + Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 121 YRKALVPFFAAAYANDMEGVRASLQAGTPLA---ISAAAAKKGFEDHILIGRKKIDAIKL 177 + K+L A A RA L P+ A + + + I + A + Sbjct: 123 FDKSLAEALKLANAGQWNEARALLANNQPVIDRLNKAMTELRAYNEKI----SQAGAHRA 178 Query: 178 ESDEAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLSRPVP 237 + A A +I+ V+AV+ ++G+ + R + SL + E +++ DL+R + Sbjct: 179 QETMAAARLHAILISAAVIAVVT--LMGLLIARKIARSLAEAVELAETIAEG-DLTREID 235 Query: 238 VERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAAAL 297 DEIGH AA K+ +V +V+T R+ ++V A+ QIA GN DLSARTEQQA++L Sbjct: 236 TSSTDEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSL 295 Query: 298 EESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRKIV 357 E++A++ E+LTS V QN ENA QA++LA +AS IA++GG+VV+QVV TM I SS I Sbjct: 296 EQTAAATEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIA 355 Query: 358 DIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELID 417 DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK+LID Sbjct: 356 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLID 415 Query: 418 DSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQMDQ 477 DSV KV +GS+LV AG+TM ++V+SV+RVT +V I+ AS EQS GI QVNQAIS MDQ Sbjct: 416 DSVSKVENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQ 475 Query: 478 GTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQLGSRTALPVRSVDVTPATNRLP 533 TQ+NAALVEEA AAAQ+LQ QA +LE V VF+L + A+ + ++ T LP Sbjct: 476 STQENAALVEEATAAAQSLQEQARQLERAVNVFKL-RQEAMDILEMEDHRVTQTLP 530 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 343 bits (880), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 237/549 (43%), Positives = 332/549 (60%), Gaps = 31/549 (5%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNQLKGYLADS 60 MTI ++L L + +L ++ GL+Q R IP + +LN A Sbjct: 31 MTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNG-----ATD 85 Query: 61 RLAGYRLSVFANLADKSELQKAVD---AANKSLDEEFAHYERDLIFDDQDRALIQADQ-- 115 + G RL++ + + + +K V A ++ + F +ER I DD DR +++AD+ Sbjct: 86 AIYGIRLNIARYVIEPTAREKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRF 145 Query: 116 -ANIEVYRKALVPFFAAAYANDMEGVRASLQAGTPLAISAAAAK-KGFEDHILIGRKKID 173 A E +R A+V +A + + A T + A + K + + + GR+ + Sbjct: 146 FAEYEKHRMAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQL--GRQGAE 203 Query: 174 AIKLESDEAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLS 233 A +DE ++ IA + +++ L + ++R + HSL + + + + DLS Sbjct: 204 A----ADEHLQLSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTIGRG-DLS 258 Query: 234 RPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQ 293 + + DE+ + ++ +V+++ S ++ A R+IA+GN DLS+RTE Q Sbjct: 259 SQIVLRGRDEVTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQ 318 Query: 294 AAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSS 353 A +LEE+ S++ QLT+ V QN +NARQA+ELAQSAS +A Q G VV +V+ TM +IN SS Sbjct: 319 AGSLEETVSAMGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASS 378 Query: 354 RKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 413 KIVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIK Sbjct: 379 LKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIK 438 Query: 414 ELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAIS 473 ELIDDSV+KV SGS+LV QAGSTM E+V SV+RV+ IV I+ AS EQS GI+QVNQAI Sbjct: 439 ELIDDSVNKVQSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIG 498 Query: 474 QMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQLGSRTALPVRSVDVTPATNRLP 533 MDQ TQQNAALVEEAAAA+Q+L+ QA+ L V+VF+L P P Sbjct: 499 MMDQTTQQNAALVEEAAAASQSLREQAKGLAQAVSVFRLERSAEAP------------QP 546 Query: 534 DAAAPVNPQ 542 ++ PV Q Sbjct: 547 ESTEPVQEQ 555 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 342 bits (878), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 196/303 (64%), Positives = 239/303 (78%) Query: 231 DLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSART 290 DLS + V DE G + + + +VS RS TD+++ A+ +IAAGN DLS+RT Sbjct: 233 DLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRT 292 Query: 291 EQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSIN 350 EQQA++L E+AS++E+L S V QN +NARQA++LA SAS +A QGG VV QVVDTM +IN Sbjct: 293 EQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAIN 352 Query: 351 HSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 410 SSRKIVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAK Sbjct: 353 ASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAK 412 Query: 411 EIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQ 470 EIKELI+DSV KV GS+LVEQAG+TM E+V SV+RVT IVA I+ AS EQ+ GI Q+N Sbjct: 413 EIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINL 472 Query: 471 AISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQLGSRTALPVRSVDVTPATN 530 AI+QMDQ TQQNAALVEEAAAAA ++Q QA +L +V+VF+L R L R +DVTP++ Sbjct: 473 AITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSEREPLVRREIDVTPSSP 532 Query: 531 RLP 533 LP Sbjct: 533 VLP 535 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 328 bits (840), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 232/517 (44%), Positives = 315/517 (60%), Gaps = 14/517 (2%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNQLKGYLADS 60 + I K+L L+ + + L G + +L++ + I ++ +P MD+ +L+G L Sbjct: 7 LNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSLPPL 66 Query: 61 RLAGYRLSVFANLADKSELQKAVDAANKSLDEEFAHYERDLIFDDQDRALIQADQANIEV 120 RL L +++ KA+ +L + A +E+ + + Q++ N+ Sbjct: 67 RLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRM-SEPQEKEQYAQFLKNLTA 125 Query: 121 YRKALVPFFAAAYANDMEGVRASLQAGTPLAISAAAAKKGFEDHILI----GRKKIDAIK 176 Y K A + RA + + G D I+ G + D Sbjct: 126 YVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMV---GNLDAIVKINTSGSAQADE-- 180 Query: 177 LESDEAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLS-RP 235 E+ + A R ++ ++ VL+ +L + V L Q + V++ DL+ R Sbjct: 181 -EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARG-DLTLRI 238 Query: 236 VPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAA 295 P R DE G A + + ++VS R TD++T A+ +IA GN DLS RTEQQA Sbjct: 239 RPAGR-DETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAG 297 Query: 296 ALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRK 355 +LEE+AS++E+LTS V QN +NARQAN+LA +AS IASQGG+VV QVV TM I SSR+ Sbjct: 298 SLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRR 357 Query: 356 IVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 415 I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIKEL Sbjct: 358 IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKEL 417 Query: 416 IDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQM 475 IDDSV KV +GS LVE+AGSTM+E+V SV+RVT +VA I+ A+ EQS GI++VN AI+QM Sbjct: 418 IDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQM 477 Query: 476 DQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL 512 D+ TQQNAALVE+AAAAA +L+GQA L +VV F+L Sbjct: 478 DETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,175,520 Number of extensions: 39672 Number of successful extensions: 473 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 73 Length of query: 549 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 459 Effective length of database: 1,193,720 Effective search space: 547917480 Effective search space used: 547917480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)