BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2767.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312032|ref|YP_003776124.1| high-affinity Fe2+/Pb2+ permeas...   476   e-135

>gi|300312032|ref|YP_003776124.1| high-affinity Fe2+/Pb2+ permease
           [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  476 bits (1224), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/291 (92%), Positives = 277/291 (95%), Gaps = 2/291 (0%)

Query: 1   MGQVMFIVWRESVEALLVVGILYAWLKNGDVGARRGIPYLWGGVAAGVVLAAALGAALLG 60
           MGQVMFIVWRESVEALLVVGILYAWLKNGDV ARRG+PYLWGGV AGVVLAAALGAALLG
Sbjct: 1   MGQVMFIVWRESVEALLVVGILYAWLKNGDVAARRGLPYLWGGVVAGVVLAAALGAALLG 60

Query: 61  FSELLSGDAQTYFQIAIVLIAAVLIVQMVFWMRKHGRTLKKEMESSMQSSYESGNWWGVF 120
           FSELLSGDAQTYFQIAIVLIAAVLIVQMVFWMRKHGRTLKKEMESSMQ+SY+SGNWWGVF
Sbjct: 61  FSELLSGDAQTYFQIAIVLIAAVLIVQMVFWMRKHGRTLKKEMESSMQASYDSGNWWGVF 120

Query: 121 VLVMLAIAREGSETAVFLYGIGLGQQDASTVSLVLAGVIGFGLAFLTFYLLQLGGKIFSW 180
           VLVMLAIAREGSETAVFLYGIGLGQQDAST SLVLAGVIGFGLAFLTFYLLQLGGKIFSW
Sbjct: 121 VLVMLAIAREGSETAVFLYGIGLGQQDASTASLVLAGVIGFGLAFLTFYLLQLGGKIFSW 180

Query: 181 RRFFQVTEVILLLLAAGLLVTGVEKLFDVLLENSDALASASWTMILTGQLWDTSALLDDS 240
           RRFFQVTEVILLLLA+GLLVTGVEKLFDVLLE+SD LASA WTM LT  +WDTS LLDDS
Sbjct: 181 RRFFQVTEVILLLLASGLLVTGVEKLFDVLLESSDMLASADWTMTLTAPVWDTSMLLDDS 240

Query: 241 STLGNLVSTLTGYRARPALLSVIVYVLYWVVVCSALYRKPKPAPQGKRQEA 291
           +TLG+LVSTLTGYRARPALLSVIVY LYW VVCSALYRKP+P P  KRQEA
Sbjct: 241 TTLGSLVSTLTGYRARPALLSVIVYALYWAVVCSALYRKPQPQP--KRQEA 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 690,478
Number of extensions: 21031
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)