BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2764.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   629   0.0  
gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   280   9e-77

>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  629 bits (1623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/335 (92%), Positives = 325/335 (97%)

Query: 1   MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEVFDSLTTFMIGLLFFMHGAKLSREGVV 60
           MARPRFLPDNMTL+LLAVV+TAS LPCTGQVAEVFD LTTFMIGLLFFMHGAKLSRE VV
Sbjct: 1   MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV 60

Query: 61  AGFTHWKLHVTVLLCTFALFPLIGLALKPLLTQFITPELYLGLLFLCVLPSTVQSSIAFT 120
           AGFTHWKLHVTVLLCTFALFPL+GLA KPLLT FITPELYLGLLFLCVLPSTVQSSIAFT
Sbjct: 61  AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT 120

Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGNGHSSLDSILKIVYQLLLPFVA 180
           SVARGNVPAAICAASASNLLGIFLTPLLVG LVVAH+G GHSSLDSILKIVYQLLLPFVA
Sbjct: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVA 180

Query: 181 GQIVRPWIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPLSMLVAVLLINA 240
           GQI RPWIGRW+ERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVP+SMLVA+L+INA
Sbjct: 181 GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 240

Query: 241 ALLAIIMGITTFGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300
            LLA+IM +TT+GSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM
Sbjct: 241 VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300

Query: 301 LFHQIQLMVCAVLAARYGARQDQVQAAMASESGGD 335
           LFHQ+QLMVCAVLAARYGARQ++V+AA+ASESGGD
Sbjct: 301 LFHQLQLMVCAVLAARYGARQEEVEAAVASESGGD 335


>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  280 bits (717), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 166/294 (56%), Positives = 212/294 (72%), Gaps = 4/294 (1%)

Query: 39  TTFMIGLLFFMHGAKLSREGVVAGFTHWKLHVTVLLCTFALFPLIGLALKPLLTQFITPE 98
           +   I LLFF+HGAKLSRE  +AG    +LH+  L  TF LFPL+GL LK +    +TP+
Sbjct: 5   SNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDLLTPQ 64

Query: 99  LYLGLLFLCVLPSTVQSSIAFTSVARGNVPAAICAASASNLLGIFLTPLLVGVLV-VAHD 157
           L++G+LF+C L STVQSSI FTS+ARGNVPAAIC A+ASNLLGI +TPLLV +L+   H+
Sbjct: 65  LWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLHRHHE 124

Query: 158 GNGHSSLDSILKIVYQLLLPFVAGQIVRPWIGRWVERNKSWLKFVDQSSILLVVYVAFSE 217
            NG   L  +L I+ QLLLPFV G ++RPWIG W+ R+K  +  VD+  ILL VY AFS 
Sbjct: 125 ANG---LSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFSA 181

Query: 218 AVVQGLWHQVPLSMLVAVLLINAALLAIIMGITTFGSRRLGFSKEDEITIVFCGSKKSLA 277
           AV QG+WH  P   L  ++L+NA LL  ++ ITT+G+R L   + DEI +VFCGSKKSLA
Sbjct: 182 AVAQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSLA 241

Query: 278 SGVPMAKVLFSSGAIGMVLLPVMLFHQIQLMVCAVLAARYGARQDQVQAAMASE 331
           SG+P+A VLF+     +VLLP+MLFHQ+QLM+CAVLA RY A+QD + A  AS 
Sbjct: 242 SGIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQDHLDADDASS 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 967,274
Number of extensions: 37907
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)