BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2747.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312018|ref|YP_003776110.1| transcription regulator protein... 559 e-160 gi|300313630|ref|YP_003777722.1| LysR family transcription regul... 168 6e-43 gi|300313065|ref|YP_003777157.1| LysR family transcription regul... 148 6e-37 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 144 1e-35 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 137 7e-34 >gi|300312018|ref|YP_003776110.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 559 bits (1440), Expect = e-160, Method: Compositional matrix adjust. Identities = 285/305 (93%), Positives = 296/305 (97%) Query: 1 MSLLDHIEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRA 60 MS+LDHIEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERL+TQLLYRSSRA Sbjct: 1 MSILDHIEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLATQLLYRSSRA 60 Query: 61 ISPTAAGSELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFV 120 ISPTAAGSELAARLE+GFEQI AL QL+SSA GSLGELRINVFADAAHLLIEPAIPEFV Sbjct: 61 ISPTAAGSELAARLEQGFEQIGAALSQLDSSAAGSLGELRINVFADAAHLLIEPAIPEFV 120 Query: 121 RQCPKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDR 180 RQCPKV+LTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAA+P YLDR Sbjct: 121 RQCPKVRLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAAAPAYLDR 180 Query: 181 HGRPLTLEDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAG 240 HGRPLTL+DLQQHTCLQLLLGDNSSYQWEFGRGK+RQRIRVPGLVTINNTAATIAAAKAG Sbjct: 181 HGRPLTLQDLQQHTCLQLLLGDNSSYQWEFGRGKHRQRIRVPGLVTINNTAATIAAAKAG 240 Query: 241 VGIAYLLEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDIIRLQHG 300 VGIAYLLE RISKEI+EGSLE ILEEW APS PFHMYYS+RRHAHPALRKLIDIIRLQHG Sbjct: 241 VGIAYLLEGRISKEIEEGSLETILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHG 300 Query: 301 LARLR 305 L+RLR Sbjct: 301 LSRLR 305 >gi|300313630|ref|YP_003777722.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 168 bits (425), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 112/290 (38%), Positives = 161/290 (55%), Gaps = 2/290 (0%) Query: 8 EFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAG 67 EF++L+ FV ++ SF AA LGL+PSA S +++LE+R+ +LL R++R+++P+A G Sbjct: 5 EFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEDRIGARLLNRTTRSVAPSANG 64 Query: 68 SELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKVK 127 L R+ F ++A A+ Q + G LRIN AA +I P + F + P V Sbjct: 65 ELLYRRVAPLFREMAAAVAQASEATGQMSGRLRINTLGIAARTIIAPRLARFHQAHPDVV 124 Query: 128 LTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLTL 187 L IVVDD DIV+ +DAGIR G+ V + MV LT VA ASPDYL R G P + Sbjct: 125 LDIVVDDTLTDIVAGRFDAGIRVGNRVEKDMVAIRLTPDLNMVAVASPDYLARRGVPRSP 184 Query: 188 EDLQQHTCLQLLLG-DNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYL 246 +DL HTC+ L D Y+WEF + + + V G + N+ IAAA G+GIAY Sbjct: 185 KDLHDHTCINWRLQMDGRHYRWEFKKRGQQLEVAVDGPIITNHADIGIAAALGGLGIAYH 244 Query: 247 LEAR-ISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDII 295 E +S+ + +G L +L +W +YY NR+H L ID + Sbjct: 245 FERDGVSELLSQGRLVQVLADWSISRPGLFLYYPNRQHRPALLGAFIDCL 294 >gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 148 bits (373), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 143/292 (48%), Gaps = 6/292 (2%) Query: 7 IEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAA 66 I DL +FV GS AAA Q +TP+ S AMKRLE L +LL RS+R++ T Sbjct: 2 IRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPD 61 Query: 67 GSELAARLEEGFEQIALALGQLESSAEGSL---GELRINVFADAAHLLIEPAIPEFVRQC 123 G L+ +A ++ A G G L ++ +D LI + EF Q Sbjct: 62 GERY---LQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQH 118 Query: 124 PKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGR 183 P V L + V D+ D+ + D IRY +V PL +R V ASPDYL RHGR Sbjct: 119 PAVSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLAPDNRRVLCASPDYLARHGR 178 Query: 184 PLTLEDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGI 243 P + DL+QH CL+ +L D QW F + +++V G T ++ A G GI Sbjct: 179 PRSPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGI 238 Query: 244 AYLLEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDII 295 AY + ++ G LEA+LE++ +P H+ ++R P +R L +++ Sbjct: 239 AYKSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELL 290 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 6/290 (2%) Query: 8 EFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAG 67 + LR+F + SF AA QLGL ++ S A+++LE+ L T+LL R++R + TA G Sbjct: 3 QLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADG 62 Query: 68 SELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKVK 127 R E ++ G A+ G LR+++ + A ++ PA+P F+ + P+++ Sbjct: 63 EAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLE 122 Query: 128 LTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLTL 187 + + D+ +D+V+EG+D +R G +V P+ + + ASP+YL R+G P TL Sbjct: 123 IELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQ-INCASPEYLRRYGTPQTL 181 Query: 188 EDLQQHTCLQL--LLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAY 245 EDL QH + +LG S WE+ G+ + + + G +T+N+T AA AG+G+ Sbjct: 182 EDLAQHRLVHYRQVLGGRSP-GWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLIQ 240 Query: 246 --LLEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLID 293 L+ A+ + +D G + +L ++ P + Y++RRH L +D Sbjct: 241 LPLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMD 290 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 137 bits (346), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 135/288 (46%), Gaps = 2/288 (0%) Query: 9 FSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAGS 68 F ++VF ++ SF AA L L + + ++ LE L +LL R++R IS T G+ Sbjct: 4 FQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPDGA 63 Query: 69 ELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKVKL 128 R + + G G LRI+V A L++ P + +F + P ++L Sbjct: 64 AYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDIEL 123 Query: 129 TIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLTLE 188 + + D+P+D+V E D IR G MV A + V A+P YL+RHG P T+E Sbjct: 124 MMGMGDRPVDLVQEAVDCVIRIGELQDSSMV-ARRIGTFQTVTCAAPAYLERHGVPHTIE 182 Query: 189 DLQQHTCLQLLLGDNS-SYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYLL 247 DLQQH + + W+F + +++ G + +N A + A G G+ Sbjct: 183 DLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQAP 242 Query: 248 EARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDII 295 +++ IDEG L +L +W P + Y + RH P +R +D + Sbjct: 243 LYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWV 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 944,611 Number of extensions: 39231 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 51 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 51 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)