BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2743.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312014|ref|YP_003776106.1| transcription regulator protein...   385   e-108
gi|300309619|ref|YP_003773711.1| transcription regulator protein...    72   4e-14

>gi|300312014|ref|YP_003776106.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  385 bits (989), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/205 (92%), Positives = 197/205 (96%)

Query: 1   MKLQPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNK 60
           MKLQPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNK
Sbjct: 1   MKLQPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNK 60

Query: 61  DALIFALRERHATRMLALFEDVVAHIDDSGTLSSDFDKLISALVAAHLLEPELNRILEEE 120
           DALIFALRERHATRMLALFED VAHIDD+GTLSSDFD++ISA+VAAHLLEPELNRILEEE
Sbjct: 61  DALIFALRERHATRMLALFEDAVAHIDDAGTLSSDFDQVISAVVAAHLLEPELNRILEEE 120

Query: 121 FPAYNLPVSTEIRQGFFDAIRRVLEKHRHSITTPDIDVATFVVQRMLKALIKAVVLTGPG 180
           FPAYNLPVSTEIRQGFF+AI RVLEKHR SITTPD+D+A FV+QRMLKALIKAVVLTGPG
Sbjct: 121 FPAYNLPVSTEIRQGFFEAIHRVLEKHRDSITTPDLDLAAFVLQRMLKALIKAVVLTGPG 180

Query: 181 GVSPGSVRPEILPAVIGYLTAQRSD 205
           GV PGSVR EILPAVIGYLT  RSD
Sbjct: 181 GVPPGSVRSEILPAVIGYLTLPRSD 205


>gi|300309619|ref|YP_003773711.1| transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 71.6 bits (174), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 6  RKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDALIF 65
          RK P+QARS  +V  IL+A  +VL+  G A+  T  VAE AG+SVGS+YQYFPNK A++F
Sbjct: 12 RKAPQQARSTDLVKAILEAAVQVLLREGAARFTTARVAERAGVSVGSIYQYFPNKAAILF 71

Query: 66 ALR 68
           L+
Sbjct: 72 RLQ 74


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,785
Number of extensions: 20617
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)