BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2723.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311993|ref|YP_003776085.1| malonate decarboxylase gamma-su...   437   e-124

>gi|300311993|ref|YP_003776085.1| malonate decarboxylase
           gamma-subunit [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  437 bits (1124), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/246 (87%), Positives = 224/246 (91%)

Query: 1   MNQTVTPPQVDWRALAQELFPQGHAITEQEYFLSGTAQVDGSTVTVVGTTGHTPIGIEIA 60
           M  T TP QVDWRALAQ LFPQGH ITE E+FLSGTAQVDG TVTVVGTTGHTPIGIEIA
Sbjct: 1   MTATPTPGQVDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIA 60

Query: 61  LAQASVILQTVREHPGRPIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRV 120
           LAQA+ IL TVR HPGR IVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRV
Sbjct: 61  LAQATAILDTVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRV 120

Query: 121 IGLVYDQALSGGFITSGLIADACYALPAATIRVMGLPAMARITKVPQERLTELAKSNPVF 180
           IGLVYDQALSGGFITSGLIADACYALP ATIRVMGLPAMARITKVP+ERLTELAKSNPVF
Sbjct: 121 IGLVYDQALSGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVF 180

Query: 181 APGPENYLRMGGVAEIWNGDLAQALSQALAVDRSADTRAAIGLERGGRKWAQRVIEAVVH 240
           APGPENYLRMGGVAEIW+GDLAQA+ QALA   +AD RAA+G  RGGR+WAQRVI+AV H
Sbjct: 181 APGPENYLRMGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAVAH 240

Query: 241 DTPLNG 246
           D PLNG
Sbjct: 241 DAPLNG 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 771,717
Number of extensions: 30696
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)