BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2722.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311992|ref|YP_003776084.1| phosphoribosyl-dephospho-CoA tr...   291   3e-80

>gi|300311992|ref|YP_003776084.1| phosphoribosyl-dephospho-CoA
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  291 bits (745), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 149/230 (64%), Positives = 177/230 (76%)

Query: 12  RHHLLWLSESAWVRLQAQCSDARQVAALAHWQRMRWPVIVRRLEGGVADDEICVGIALPP 71
           RHHLLWL+E+AW RLQ Q  D+R+ A LA W++MRWPV+VRR E     DE+C GIALPP
Sbjct: 6   RHHLLWLTEAAWTRLQTQSQDSREQAVLARWRQMRWPVVVRRAEADAGADELCAGIALPP 65

Query: 72  DAQGNKPRIALRVQAQEVVARHAPFLLRDIVAAHLSGLPSAWQSGLDQLQQHMARAGITL 131
           DAQGNKPR+ALRVQ  EV A HAP+LLRDI AA L GLP  WQ+G++ LQQ M  AGI L
Sbjct: 66  DAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIAL 125

Query: 132 AVFGSLAWQALTAEPYLRSSSDIDLLFQPRSLAQLEAGVRLLAWQAMFLPLDGEVMFPEG 191
           AVFGSL+WQA+TA+ Y+RSSSDIDLLF P S AQL  G++LLA QA  LPLDGE++FP+G
Sbjct: 126 AVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLARQAAMLPLDGEIVFPDG 185

Query: 192 AAVSWKEWRQVAVLGNGGEGRVLVKRAAGVALERVATLIASLPQEESQSC 241
           AAVSWKEW+QV       + RV+VKR A VALE VA L+A+L   E Q+C
Sbjct: 186 AAVSWKEWQQVMRKETKSDARVMVKRPAAVALEPVAQLLAALAAREGQAC 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 889,431
Number of extensions: 39606
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)