BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2712.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...   557   e-160
gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   406   e-114

>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  557 bits (1436), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/309 (89%), Positives = 288/309 (93%), Gaps = 3/309 (0%)

Query: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60
           MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE
Sbjct: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60

Query: 61  TIRNVIPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDAAPGHKNVMAQ 120
           TIR+V+PKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMD   G KNVMAQ
Sbjct: 61  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 120

Query: 121 MTALYEREGKSLLAVQDVPRPETRQYGIVSGSPYGERTELLSGIVEKPSPEEAPSTLAVV 180
           MTA++EREGKSLLAVQDVPRPETRQYGIVSGS Y +R EL+SGIVEKP+PEEAPSTLAVV
Sbjct: 121 MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV 180

Query: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240
           GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA
Sbjct: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240

Query: 241 AVAMGFKHKEVGSGFAQFLQEFTSQHDLTQAAQPKGPATVTPLKPAAGNQPA-SAATTDQ 299
           AVAMGFKHKEVGSGFAQFLQ+F +QHDL QAAQPKGPATVTPLKP A   PA   A  ++
Sbjct: 241 AVAMGFKHKEVGSGFAQFLQDFAAQHDLQQAAQPKGPATVTPLKPNAA--PAHGGAGQEK 298

Query: 300 QPAVARSVM 308
           QP  A SVM
Sbjct: 299 QPVAANSVM 307


>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/266 (71%), Positives = 226/266 (84%)

Query: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60
           MLPIVDKPLI YAVEEAV AGITEM+FITGRNKRAIEDHFDKAYELESELEAAGK KLLE
Sbjct: 31  MLPIVDKPLIHYAVEEAVAAGITEMVFITGRNKRAIEDHFDKAYELESELEAAGKKKLLE 90

Query: 61  TIRNVIPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDAAPGHKNVMAQ 120
            ++NV+PK +NC+++RQ+ PLGLGHAVL A+P+VG+EPFAVLLADDFMD   G K V+AQ
Sbjct: 91  IVQNVVPKSVNCIFIRQSVPLGLGHAVLCARPVVGEEPFAVLLADDFMDTDAGVKPVLAQ 150

Query: 121 MTALYEREGKSLLAVQDVPRPETRQYGIVSGSPYGERTELLSGIVEKPSPEEAPSTLAVV 180
           MT +YEREG S+LAVQ+VP+ +T+QYGIVS +PY    E ++ IVEKP+PEEAPSTLAVV
Sbjct: 151 MTEIYEREGMSMLAVQEVPQSDTKQYGIVSATPYQPNLERVNAIVEKPAPEEAPSTLAVV 210

Query: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240
           GRYVL   IF+ LENIG GAGGEIQLTD I+ L+Q E +LAYRY+GQR+DCGSKLGYLKA
Sbjct: 211 GRYVLNNRIFDYLENIGRGAGGEIQLTDGIAKLMQAESVLAYRYQGQRYDCGSKLGYLKA 270

Query: 241 AVAMGFKHKEVGSGFAQFLQEFTSQH 266
            VAMG KH E G+ F++FL++   + 
Sbjct: 271 TVAMGMKHPETGAAFSEFLKDVAGKQ 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,365
Number of extensions: 44707
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)