BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2707.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311973|ref|YP_003776065.1| hypothetical protein Hsero_2661...   196   1e-51

>gi|300311973|ref|YP_003776065.1| hypothetical protein Hsero_2661
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score =  196 bits (499), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 129/190 (67%)

Query: 46  CRVLCEPIRLGQAAGTDAMVVYLSPLQACIDAAFLSLPAEQYQVVPASSFHPDQMIEQHH 105
           C V+CE I +G  AG DAMVVYLSPL+A IDAA+ +     YQV+    F PD+++ QH 
Sbjct: 21  CEVMCESIAVGSLAGRDAMVVYLSPLEADIDAAWNARSGGHYQVLAVHDFLPDELLRQHR 80

Query: 106 GRLPYCLHFAWAASNGCLVVRPEGGLVRLSTSRMGRMSSLLDAIPLHIELSELDCYERMW 165
             LPYCLH  W A +G L VR +GGLVR+S + +  +S+ ++A+ L +E  +L+   R+W
Sbjct: 81  DSLPYCLHIGWGARDGRLAVRRDGGLVRVSAAALAWVSADVEAVRLVVEPFQLESRSRLW 140

Query: 166 EYAGLFAHAECHARDLVMSEPERKRHAARALARIPGVCLPVGPINQLALYDLESAHWHFV 225
           E AGL+AHAE  A+ L  +EPER+RHA RA+ R+PG       INQLALYDLESAHWHFV
Sbjct: 141 EGAGLYAHAEVEAKALACTEPERRRHAQRAIVRLPGTVAAPPGINQLALYDLESAHWHFV 200

Query: 226 GLDLFSEFLA 235
            L L  + L+
Sbjct: 201 PLSLAQQILS 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 835,018
Number of extensions: 34564
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)