BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2704.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311970|ref|YP_003776062.1| integral membrane protein [Herb...   368   e-103

>gi|300311970|ref|YP_003776062.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  368 bits (944), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/241 (80%), Positives = 207/241 (85%), Gaps = 5/241 (2%)

Query: 9   MASAVVIAGALSGVLLSGVQQFQVEKIIFKAEEYEKAGE--AAAAQAQEHDHDHDQATAT 66
           MASAVV+AGALSGVLLSGVQQFQVEK+I +AE+YEKA E  A+AA    H+H+HDQA   
Sbjct: 1   MASAVVVAGALSGVLLSGVQQFQVEKLILQAEQYEKAAEEGASAAPQAAHEHEHDQAHEH 60

Query: 67  SAHAHEHAH---DADAWEPADGAERTGYTVLANVSMAVGFALMLVAAFALSGRTISWRSG 123
           +A +        DADAWEPADGAERTGYTVLANVSMAVGFAL+LVAA  LSGR +SWRSG
Sbjct: 61  AAASAHAHEHSHDADAWEPADGAERTGYTVLANVSMAVGFALLLVAAITLSGRQVSWRSG 120

Query: 124 LLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLHARQLWWVMTAAMTAASLGLFVFTRGWPY 183
           LLWGLAGYGVFFVAPSLGLPPEVPGTLAAPL ARQ WWVMTA MTAASLGLFVFTR W  
Sbjct: 121 LLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQFWWVMTAVMTAASLGLFVFTRAWWC 180

Query: 184 KLVGVLLLVVPHLVGAPQPEVHGSVAPEELAQAFIHATALANAVFWLALGGLTGFFYRRF 243
           KL+ V LLVVPHLVGAPQPEVHG VAPEELA AFI ATALANAVFWLALGGLTGFFYRRF
Sbjct: 181 KLLAVALLVVPHLVGAPQPEVHGGVAPEELAHAFIRATALANAVFWLALGGLTGFFYRRF 240

Query: 244 G 244
           G
Sbjct: 241 G 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 675,441
Number of extensions: 25347
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)