BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2698.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD tra...   709   0.0  

>gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/396 (88%), Positives = 366/396 (92%)

Query: 1   MAHQGELQRAAYDLAVLAPNGLRRGRSTGSCATAAVRAALYRLLAGVTVQHTEVSLPDGL 60
           M    ELQRA YDLAVLAPNGLRRGRSTGSCATAAVRAALYRLLAGVT+Q TEVSLPDG 
Sbjct: 1   MDASSELQRAEYDLAVLAPNGLRRGRSTGSCATAAVRAALYRLLAGVTLQETEVSLPDGR 60

Query: 61  HYLCVPIKTVEMLGADIAQAEVLKDGGDDPDNTHGATIFAQVRRNDVGQIRFFAGAGVGT 120
           HYLCVP++ VEM+  DIAQA+VLKDGGDDPDNTHGATIFAQVRRN  G++RFFAG GVGT
Sbjct: 61  HYLCVPVQAVEMIAPDIAQADVLKDGGDDPDNTHGATIFAQVRRNQSGEVRFFAGQGVGT 120

Query: 121 ATMAGLRVAVGEPAINPVPRAMMRVAVAEVLAELRSGAPASGFDLTIGCREGLAIAPKTF 180
           ATM GLRVAVGEPAINPVPRAMMR AVAEVLAELR G PA GFDLTIGCREG++IAPKTF
Sbjct: 121 ATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELRPGEPACGFDLTIGCREGVSIAPKTF 180

Query: 181 NPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAAGDALAYLPGKIGRVFV 240
           NPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACA GDA+AYLPGKIGRVFV
Sbjct: 181 NPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAVAYLPGKIGRVFV 240

Query: 241 AQQLGLPDKRSVQIANFLGDALDFTQQALAEEGRTLPLLWLAGHPGKLAKVLDGVWDTHS 300
           AQ+LGLPDKRSVQIANFLGDALDFT+QALAE GRTLPLLWLAGHPGKLAKVLDGVWDTHS
Sbjct: 241 AQELGLPDKRSVQIANFLGDALDFTEQALAEAGRTLPLLWLAGHPGKLAKVLDGVWDTHS 300

Query: 301 SKSNMAMQGVARVAEEMNAAGQGVLFDATLLQQMKEANTVEAIIELVRQQDAGLSRRLWS 360
           SKSNMAMQGVARVAEEMNAA  GVLFDA LLQQMKEANTVEAIIELVRQQDA L+RRLW 
Sbjct: 301 SKSNMAMQGVARVAEEMNAAESGVLFDAPLLQQMKEANTVEAIIELVRQQDAALARRLWC 360

Query: 361 EIEARIAALAHTRVPAVERIEVRLFDLDGRQLGAGA 396
           EIEARIA LA  RVP+V RIEVRLFDL+G QLGAGA
Sbjct: 361 EIEARIATLAQARVPSVARIEVRLFDLEGHQLGAGA 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,172,938
Number of extensions: 46007
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)