BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2697.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311964|ref|YP_003776056.1| precorrin-2 C20-methyltransfera...   460   e-131

>gi|300311964|ref|YP_003776056.1| precorrin-2 C20-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  460 bits (1184), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/252 (92%), Positives = 242/252 (96%)

Query: 1   MSGRLTGIGVGPGPAGYLPLAAIAALRSADLIYIPRARGADLSVALQCLEGVEFDRSRLC 60
           MSGRLTGIGVGPGPAGYLPLAAIAALRSADLIYIPRARGADLSVALQCL+GVEFDRSRLC
Sbjct: 5   MSGRLTGIGVGPGPAGYLPLAAIAALRSADLIYIPRARGADLSVALQCLDGVEFDRSRLC 64

Query: 61  EIEFNMDPDRQVLQEHYAQLGQQLAAQLRQGLQVVYLTIGDALTYSTYGYVLAAVRDLYP 120
           EIEFNMDPDRQVLQEHYAQLGQQLAAQLRQGLQVVYLTIGDALTYSTYGYVLAAVRDLYP
Sbjct: 65  EIEFNMDPDRQVLQEHYAQLGQQLAAQLRQGLQVVYLTIGDALTYSTYGYVLAAVRDLYP 124

Query: 121 ECDCLTLPGITSYAAAAAALEWPLGVGKERTLILPCPEDAETLRAEIEHHDIVVLMKVGA 180
            CDC+T PGITSYAAAAAALEWPLGVGKERTLILPCP+DA +LRAEIE HDIVVLMKVGA
Sbjct: 125 GCDCVTFPGITSYAAAAAALEWPLGVGKERTLILPCPDDAASLRAEIESHDIVVLMKVGA 184

Query: 181 RLPWVLALLREMDIAQHCGFARRIGLEGEVLATDLSTLDAAQASGYLAVLLIRKSAQALR 240
           RLPWVLALLREM IAQHCGFARRIGLEGEVLA+DL+ LDAA ASGYLAVLLIRK+AQA R
Sbjct: 185 RLPWVLALLREMGIAQHCGFARRIGLEGEVLASDLTALDAADASGYLAVLLIRKTAQAQR 244

Query: 241 HRAPQENLKGNA 252
           HRAPQE+ KG A
Sbjct: 245 HRAPQESSKGTA 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 744,108
Number of extensions: 27825
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)