BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2693.p (384 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirill... 552 e-158 gi|300311859|ref|YP_003775951.1| CobW/P47K family protein [Herba... 88 9e-19 gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protei... 85 1e-17 gi|300314043|ref|YP_003778135.1| cobalamin synthesis protein/P47... 81 1e-16 >gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 552 bits (1422), Expect = e-158, Method: Compositional matrix adjust. Identities = 314/376 (83%), Positives = 333/376 (88%), Gaps = 2/376 (0%) Query: 8 LASALPSVLPPALPPIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGE 67 +A +LP L PALPPIPVTVVTGFLGAGKTTLLRGL+QRRQSRRLALLINEFGEVAIDG+ Sbjct: 3 VALSLPE-LAPALPPIPVTVVTGFLGAGKTTLLRGLLQRRQSRRLALLINEFGEVAIDGD 61 Query: 68 LLRAEGDAQGQVQIQDFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAV 127 LLRAEGDAQGQVQIQDFAHGLIAYGDD HFVPAMLALAARRAQIDHVLIETSGLALPSAV Sbjct: 62 LLRAEGDAQGQVQIQDFAHGLIAYGDDAHFVPAMLALAARRAQIDHVLIETSGLALPSAV 121 Query: 128 MEVLQSPELAPHFVLDATLAVVDTPLLLEDAFASGNAAADATAQLFRQQLECADVVVLNK 187 MEVLQ E+A HFVLDATLAVVDTPLLLEDAFAS +A ATAQLFRQQLECADVVVLNK Sbjct: 122 MEVLQGAEMARHFVLDATLAVVDTPLLLEDAFASADAVGAATAQLFRQQLECADVVVLNK 181 Query: 188 IDGMEEAPLLQAEHTVRALAPNVRFLELAYDARLDIRLALGLRLHQAGATVHHHYTPVAM 247 IDGMEEAPLLQAE VRALAPNVRFLELAY ARLDIRLALGLRLHQAGATVHHHYTPV+M Sbjct: 182 IDGMEEAPLLQAEQAVRALAPNVRFLELAYGARLDIRLALGLRLHQAGATVHHHYTPVSM 241 Query: 248 PGERATVAADQWRFNGHAHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSEQRQDGDTLRR 307 PGERA VA DQ RFNGH HSGLGAHSHGLSTHKHFHEQDPGWQSFTLRS QD + LR+ Sbjct: 242 PGERAQVAPDQRRFNGHVHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSLAHQDAERLRQ 301 Query: 308 AVAAAALDQPILRTKGFIVTGSERAQLLQAVRARVVVAEAQAGKFGTQCSELVFIGYHPS 367 AVAAAAL +PILR KGF+ T + A+L+QAVRARVVVAE+ G SELVFIGYHPS Sbjct: 302 AVAAAALAEPILRAKGFVHT-DQGARLVQAVRARVVVAESGQGGGRGGSSELVFIGYHPS 360 Query: 368 RARVVQLLSALTATEW 383 RA+V ++LS T +W Sbjct: 361 RAKVARILSETTGVDW 376 >gi|300311859|ref|YP_003775951.1| CobW/P47K family protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 18/212 (8%) Query: 23 IPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAEGD--AQGQVQ 80 +PVTV++GFLGAGKTTLL ++ R+ RR+A+++N+ EV ID L+R G A+ + + Sbjct: 13 LPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLARTEEK 72 Query: 81 IQDFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVL-----QSPE 135 + + ++G I E + + L AR + D ++IE++G++ P V E Sbjct: 73 LVEMSNGCICCTLREDLLMEVRKL-ARERRFDQLVIESTGISEPLPVAETFTFTDEDGAS 131 Query: 136 LAPHFVLDATLAVVDTPLLLEDAFAS----------GNAAADATAQLFRQQLECADVVVL 185 L+ LD + VVD L+D + G L +Q+E DV+VL Sbjct: 132 LSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIVL 191 Query: 186 NKIDGMEEAPLLQAEHTVRALAPNVRFLELAY 217 NK+D + L + + L P R + + Sbjct: 192 NKLDLVAADDLERLHAILHKLNPRARIVRAEF 223 >gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protein [Herbaspirillum seropedicae SmR1] Length = 413 Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 117/220 (53%), Gaps = 18/220 (8%) Query: 23 IPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAEGD-AQGQVQI 81 IPVTV++GFLG+GKTTLL +++ R ++A+++N+ EV +DG+ +R + +G ++ Sbjct: 17 IPVTVLSGFLGSGKTTLLNHILRNRAGMKVAVIVNDMSEVNMDGDDVRRNTELYRGNDEL 76 Query: 82 QDFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVL-----QSPEL 136 + ++G I + + AL AR + D++LIE++G++ P V E L Sbjct: 77 VEMSNGCICCTLRADLLEQVSAL-ARSGRFDYLLIESTGISEPIPVAETFAFLDSDGFSL 135 Query: 137 APHFVLDATLAVVDTPLL---LEDAFASGNAAADAT---AQLFRQQLECADVVVLNKIDG 190 + LD + VV+ L D A A +T + L +Q+E A+V++++++D Sbjct: 136 SELARLDTLVTVVNGETFEQQLADHVAIAQADGASTRPLSDLLIEQVEYANVILVSRVDL 195 Query: 191 MEEAPLLQAEHTVRALAPNVRFLELAY-----DARLDIRL 225 ++ + + ++ L P R L +A+ D LD RL Sbjct: 196 IDASAFASLKAVLQKLNPTARILPMAHGEVDLDQVLDTRL 235 >gi|300314043|ref|YP_003778135.1| cobalamin synthesis protein/P47K family protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 14/205 (6%) Query: 13 PSVLPPALPPIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAE 72 PSV P PIPV+++TGFLG+GKTTLL L+ + + + ++INEFGE+ +D LL A Sbjct: 3 PSV-PAGDAPIPVSLLTGFLGSGKTTLLNHLITQPEMKDTLVIINEFGEIGLD-HLLVAH 60 Query: 73 GDAQGQVQIQDFAHGLIAYGDDEHFVPAMLALAAR--RAQIDHVLIETSGLALPSAVMEV 130 + V++ GD + + + A R + + V+IET+GLA P+ ++ Sbjct: 61 SQEETIVEMSSGCLCCTIRGDLKKTLKDITWRFAEGGRRKFNRVVIETTGLASPAPILHT 120 Query: 131 LQSPE-LAPHFVLDATLAVVDTPLLLEDAFASGNAAADATAQLFRQQLECADVVVLNKID 189 L + +A + LD + VD +G + D + QQ AD ++L K D Sbjct: 121 LMTDAFIAERYRLDGVIVTVDA--------VNGMSTLDHHEEAV-QQAAVADRLLLTKTD 171 Query: 190 GMEEAPLLQAEHTVRALAPNVRFLE 214 ++ A L + +R L P R L+ Sbjct: 172 LVDAATLAALQARLRTLNPGARQLQ 196 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 991,578 Number of extensions: 36254 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 4 Length of query: 384 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 297 Effective length of database: 1,207,925 Effective search space: 358753725 Effective search space used: 358753725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)