BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2691.p
         (444 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311958|ref|YP_003776050.1| cobyrinic acid A,c-diamide synt...   802   0.0  

>gi|300311958|ref|YP_003776050.1| cobyrinic acid A,c-diamide
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/444 (88%), Positives = 421/444 (94%)

Query: 1   MSDINYRCPALFISAPASGHGKTTITAALARLYRQQGKRVRVFKTGPDFLDPMVLEQASG 60
           MS+ +Y CPALFISAPASGHGKTTITAALARLYR+QGKRV VFKTGPDFLDPMVLEQASG
Sbjct: 1   MSEASYSCPALFISAPASGHGKTTITAALARLYRRQGKRVTVFKTGPDFLDPMVLEQASG 60

Query: 61  QPVVNLDLWLAGEDHCRRQVALAAAESEVLLVEGVMGLYDGEPSSADLAQLLGIPVVAVI 120
           QPV NLDLW+AG+DH RRQVALAAA+S+VLLVEGVMGLYDGEPSSADLAQLLGIPVVAVI
Sbjct: 61  QPVANLDLWMAGQDHVRRQVALAAAQSDVLLVEGVMGLYDGEPSSADLAQLLGIPVVAVI 120

Query: 121 NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLRNARPAMPLLTGLQ 180
           NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGL++ARP++PLL+GLQ
Sbjct: 121 NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQHARPSVPLLSGLQ 180

Query: 181 RDMQFALPERHLGLVAAPEVADLEARLDAVAERMSATSLAELPAPVDFGAPPAERVFPRL 240
           RD+QFALPERHLGLVAAPE+ADL+ARLDAVAERMSATSLA LPAPVDFG PPAER FPRL
Sbjct: 181 RDLQFALPERHLGLVAAPEIADLDARLDAVAERMSATSLANLPAPVDFGTPPAERSFPRL 240

Query: 241 LEGKTIAVARDVAFSFIYTSNLELLQLMGARLVFFSPLADAPLPECDAVWLPGGYPELHL 300
           LEGKTIAVARD+AFSFIYT+NL+LLQ MGA L FFSPLAD  LP CDAVWLPGGYPEL+L
Sbjct: 241 LEGKTIAVARDLAFSFIYTANLDLLQQMGATLAFFSPLADQALPPCDAVWLPGGYPELYL 300

Query: 301 ATLQAAQVTQSSLRAHVAAGKALYAECGGMLFLLDTIIGMDGASGQMCGVLPGQASVQPR 360
            TLQ AQ TQSSLR H AAGK LYAECGGMLFLL+TIIGMDGASG+MCGVLPGQA+VQPR
Sbjct: 301 QTLQDAQRTQSSLREHAAAGKPLYAECGGMLFLLETIIGMDGASGRMCGVLPGQAAVQPR 360

Query: 361 LQGLGYQTLQLNLPGAVGEHLRCHTFHYSRAVVGAQFMARGERLFDSSEGEVVYRRGQVT 420
           LQGLGYQTL L LPGAVGEHLRCHTFHYSRAVVGA+FMARGERLFDSSEGEVVYRR Q+T
Sbjct: 361 LQGLGYQTLSLKLPGAVGEHLRCHTFHYSRAVVGAEFMARGERLFDSSEGEVVYRRQQIT 420

Query: 421 ASYLHAYFRSAPRTVAALFGGASA 444
           ASYLHA+FRSAPRTVAALFGGA+A
Sbjct: 421 ASYLHAWFRSAPRTVAALFGGATA 444


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,496,102
Number of extensions: 67855
Number of successful extensions: 305
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,203,190
Effective search space: 428335640
Effective search space used: 428335640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)