BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2690.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311957|ref|YP_003776049.1| oxygen-insensitive nitroreducta...   357   e-100

>gi|300311957|ref|YP_003776049.1| oxygen-insensitive nitroreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 192/217 (88%)

Query: 7   HRYPQEQIEALYRVIRERRDMRHFLPDPVDPALLERLLQAAHDGPSVGFMQPWRFIRIAS 66
           HRY Q +IEA+YRVIRERRDMRHFLPD V P LL+RLLQAAH  PSVGFMQPWRF+RI S
Sbjct: 4   HRYAQPEIEAIYRVIRERRDMRHFLPDAVAPELLQRLLQAAHHAPSVGFMQPWRFLRIRS 63

Query: 67  RALRQQIHALVEQERIATAQALGQREDEFMRLKVEGILECGELLVAALMDRREAYVFGRR 126
            ALR+QIHALVEQERIATAQALGQRE EFMRLKVEGILECGE+LVAALMD+RE +VFGRR
Sbjct: 64  AALRRQIHALVEQERIATAQALGQREQEFMRLKVEGILECGEVLVAALMDQRERHVFGRR 123

Query: 127 TLPQMDLASLACALQNMWLAARAEGLGMGWVSLFEPQALSHLLHLPSGAEPVAVLCLGHV 186
           T+PQMDLASL+CALQNMWLAARAEGLGMGWVSLF+P AL+ LL +P GA PVAVLCLGHV
Sbjct: 124 TMPQMDLASLSCALQNMWLAARAEGLGMGWVSLFDPAALAQLLRMPDGAAPVAVLCLGHV 183

Query: 187 PAFYDKPMLEQQQWAQRQRLQDLVFQDRWPAQGETPA 223
           PAFYDKPMLEQ+QWA RQ L DLVF D WPA  E  A
Sbjct: 184 PAFYDKPMLEQEQWAARQPLADLVFDDHWPAGEEGSA 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 729,539
Number of extensions: 30433
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)