BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2686.p
         (489 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311953|ref|YP_003776045.1| cobyric acid synthase [Herbaspi...   918   0.0  

>gi|300311953|ref|YP_003776045.1| cobyric acid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 489

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/489 (93%), Positives = 469/489 (95%)

Query: 1   MADFPFHTLMIQGTTSDAGKSTLAAALCRLLKNDGIAVAPFKPQNMALNSAVTSDGGEIG 60
           MA+FPFHTLMIQGTTSDAGKSTLAAALCRLLK DG++VAPFKPQNMALNSAVTSDGGEIG
Sbjct: 1   MAEFPFHTLMIQGTTSDAGKSTLAAALCRLLKKDGVSVAPFKPQNMALNSAVTSDGGEIG 60

Query: 61  RAQALQAQAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTEAMQAVL 120
           RAQALQAQAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTEAMQAVL
Sbjct: 61  RAQALQAQAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTEAMQAVL 120

Query: 121 QSYARLRAQYACVIVEGAGSPAEINLRARDIANMGFAEAVDCPVIIVADIDRGGVFAHLT 180
           QSYARLRAQYACVIVEGAGSPAEINLRARDIANMGFAEAVDCPVIIVADIDRGGVFAHLT
Sbjct: 121 QSYARLRAQYACVIVEGAGSPAEINLRARDIANMGFAEAVDCPVIIVADIDRGGVFAHLT 180

Query: 181 GTLDCLSESERERVIGFVINRFRGDISLLQPGLDWLEQRTGKPVLAVLPYLHGLHLDAED 240
           GTLDCLSESER RVIGFVINRFRGDISLLQ GLDWLEQRTGKPVLAVLPYLHGLHLDAED
Sbjct: 181 GTLDCLSESERARVIGFVINRFRGDISLLQAGLDWLEQRTGKPVLAVLPYLHGLHLDAED 240

Query: 241 AVAVTQEVKGDFRIVVPVFPRISNHTDFDALRAHPGVDLRFIGPGQPVPPADLIILPGSK 300
           AVA TQEVKGDFRIVVPVFPRISNHTDFDALRAHPGVDLRFIGPGQPVPPADLIILPGSK
Sbjct: 241 AVAATQEVKGDFRIVVPVFPRISNHTDFDALRAHPGVDLRFIGPGQPVPPADLIILPGSK 300

Query: 301 NTRGDLSWLREHGWDAAIDRHLRYGGKLIGICGGFQMLGESVDDPHGVEGVPGSSPGLGL 360
           NTRGDL WLREHGW+AAI RHLRYGGK+IGICGGFQMLGESVDDPHGVEG PGSS GLGL
Sbjct: 301 NTRGDLRWLREHGWEAAIARHLRYGGKVIGICGGFQMLGESVDDPHGVEGAPGSSAGLGL 360

Query: 361 LSMRTALTREKRLLQVSGHCAFGDTAAPVRGYEIHMGVSSGAALQRPAFVIEGRGEGGQS 420
           L+MRT LTR+KRLLQVSGHCA GD +APVRGYEIHMGVSSGAAL RPAFVIEGRGEG QS
Sbjct: 361 LAMRTELTRDKRLLQVSGHCAVGDRSAPVRGYEIHMGVSSGAALARPAFVIEGRGEGAQS 420

Query: 421 ADGQILGSYLHGMFDTPQAVAALLAWAGLAGVEAVDLDTLREASLERLAQSCRPLYEALQ 480
           ADGQILGSYLHGMFDTPQA+ ALL WAGLAG E VDLD LRE SLERLA+SCRPLYEALQ
Sbjct: 421 ADGQILGSYLHGMFDTPQALGALLDWAGLAGAEPVDLDALREVSLERLAESCRPLYEALQ 480

Query: 481 GLPTRFGRT 489
            LPTRFGRT
Sbjct: 481 RLPTRFGRT 489


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,578,062
Number of extensions: 67876
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,198,455
Effective search space: 479382000
Effective search space used: 479382000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)