BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2683.p (1077 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1252 0.0 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 982 0.0 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 934 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 383 e-107 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 382 e-107 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1252 bits (3239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 639/1072 (59%), Positives = 810/1072 (75%), Gaps = 45/1072 (4%) Query: 1 MNPSSLFIRRPVATLLLMIAVVLSGMFAYRTLSISALPQVDYPTIQVTTLYPGAGPEVMT 60 MNPS FI RPVAT LLM+A++L G+ AYR L +SALP+VDYPTIQV TLYPGA P+VMT Sbjct: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 TAVTAPLERQLGQMAGLAQMYSTSAGGASVITLKFNLALSLDVAEQEVQAAINAANALLP 120 ++VTAPLERQ GQM GL QM STS+GGASVITL+FNL LSLD+AEQEVQAAINA + LLP Sbjct: 61 SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120 Query: 121 SGLPNPPTYKKVNPADTAVLTLAATSESLPLTQVQDLVNTRIALKLSQVSGVGLVTLAGG 180 S LP PP Y KVNPADT ++TLA TS ++PL +VQDL++TRIA K+SQ+SGVGLV+L+GG Sbjct: 121 SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180 Query: 181 QQLAIRVRANPTALAAHGLTLENLYNVINNGNVNGSKGGFDGPAHSVTIDANDQLRSAEE 240 Q+ A+R++ NP A+AA GL L+++ I N NVN +KG FDGP + TIDANDQLRSA+E Sbjct: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Query: 241 YGNLVVAYQNGQALFLRDVASIDQAPENIYQAAWAGNKPAIVINIQRQPGANVVQVVDSI 300 Y NL++AY+NG + + DVA + EN+ AWA +PA+++NIQRQPGANV+ VVDSI Sbjct: 241 YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300 Query: 301 KALLPSLQQSLPGAVKLEILSDRTQTIRASISDVQFELMLSIALVVMVSFLFLRTVSATL 360 K +LP LQ SLPGA+ + IL+DRT TIRAS+ DV+FEL+LS+ALVVMV F+FLR V AT+ Sbjct: 301 KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATI 360 Query: 361 IPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTIATGFVIDDAIVVVENIQRHLENGDSP 420 IPSVAVPLSLVGTF +MYLAGFS+NNLTLMALTIATGFV+DDAIV++ENI R++E G P Sbjct: 361 IPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 Query: 421 MEAAFKGSREIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREFSITLAVSILVSMLVSLT 480 M+AA KG+ +IGFTIISLTFSLIAVLIPLLFMGDVVGRLF EF++TLAVSIL+S +VSLT Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 Query: 481 LTPMLCAYLLRHIPPEQEGRFARWSAGRFDRLLQAYERSLGWVLGHQRLTLLVAAASLVL 540 LTPM+CA LLRH P EQ+G F S FDR++ Y L WVL Q+LTLLVAAA+L L Sbjct: 481 LTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVAAATLGL 540 Query: 541 TALLYMAVPKGFFPTQDTGQLLGVTTAPQNVSFAEMSRRQQALAAVIQQDPAVKSISSVV 600 T LLY+ VPKGFFP QDTG + G++ A Q++SF+ M +QQ LA V+ QDPAV+S++S + Sbjct: 541 TVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDPAVESLTSFI 600 Query: 601 GVDGANNTSLSNGRLQIELKSFDERSDRAPVIIERLRAA-AAQVPGIQLYLTASQDLSVD 659 GVDG N T L++GR+ I LK D R A +I RL+ AA+VPGI LY+ QDL+++ Sbjct: 601 GVDGTNAT-LNSGRMLINLKPHDVREVSATDVIRRLQGKLAAEVPGITLYMQPVQDLTIE 659 Query: 660 DQVTPSQYQLTLSTPTQSDLEAWAPRLVAALAKHPELRDITSNLQNSSPVAYVDMNRMAL 719 D V+ +QYQ TL + L W P+L+A L + EL D+ +NLQ+ AY++++R A Sbjct: 660 DSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQAYIEIDRNAA 719 Query: 720 ARYGLTATDVDTALYNAYGQRLVSTIFTQANQYRVVLEVAPQFRQDVSAFDQLYLANANS 779 +R G+T +D ALYNA+GQRL+STI+TQ+NQYRVV+EV P+F+ +A D +YL + Sbjct: 720 SRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALDSIYLVTSGG 779 Query: 780 TSSSSSSTSSSSSSSSSSSSSSSSSASSTSSSTSTSSSTTLTPMVPLRNVARIQERVGYQ 839 VPL ++A + ER Sbjct: 780 GK------------------------------------------VPLSSIATVTERTAPL 797 Query: 840 SRSRLNQTPAVTLSFNLGKGYSLEQARAAVSEAVQEIGLPDTISLRYQGAAQAFASATSN 899 + + Q PA T+SFNL KG SL +A A+ A +EIG+P + +QGAA AF ++ SN Sbjct: 798 VVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEIGMPASTVTNFQGAALAFQASLSN 857 Query: 900 TLWLILAAVITMYIVLGVLYESFIHPVTVLSTLPSAAIGALLALLLTGSDFSLIALIGVI 959 TLWLILAA++TMYIVLGVLYES+IHP+T+LSTLPSA +GALL+L+++G+D +I +IG+I Sbjct: 858 TLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGIIGII 917 Query: 960 LLIGIVKKNAIMMIDFALQAQK-EGKSAFDAIQQACVMRFRPIMMTTMAALLGAVPLMLA 1018 LLIGIVKKNAIMMIDFAL+A++ EGKS +AI QAC++RFRPI+MTTMAALLGA+PLML Sbjct: 918 LLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLMLG 977 Query: 1019 TGSGAELRRPLGLVIVGGLLLSQLLTLFTTPVIYLFFDRASVAVKRRWAARA 1070 TG G+ELR+PLG+ +VGGLL+SQ+LTLFTTPVIYL FD ++ R+ RA Sbjct: 978 TGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGQRA 1029 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/1080 (47%), Positives = 728/1080 (67%), Gaps = 21/1080 (1%) Query: 1 MNPSSLFIRRPVATLLLMIAVVLSGMFAYRTLSISALPQVDYPTIQVTTLYPGAGPEVMT 60 MN S FI+RP+AT LL I + L+G+ A+R L +S LPQVDYPTI ++ PGA PE M Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 TAVTAPLERQLGQMAGLAQMYSTSAGGASVITLKFNLALSLDVAEQEVQAAINAANALLP 120 V PLER +G +AG+ +M STS+ ++ ITL+F+L+ +D A ++VQAA+NAA LLP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 SGLPNPPTYKKVNPADTAVLTLAATSESLPLTQVQDLVNTRIALKLSQVSGVGLVTLAGG 180 +G+P+ PTY+KVNPAD +L LA TS+++ Q+ D ++ +A KLSQV GVG V++ G Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 QQLAIRVRANPTALAAHGLTLENLYNVINNGNVNGSKGGFDGPAHSVTIDANDQLRSAEE 240 Q A+R+ NPTAL +G+ ++ + N N KG + + I ANDQ ++A E Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 YGNLVVAYQNGQALFLRDVASIDQAPENIYQAAWAGNKPAIVINIQRQPGANVVQVVDSI 300 Y L+V+Y+NG + ++DVA + + ++ A + KP+++I I RQPGAN++ VD++ Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 Query: 301 KALLPSLQQSLPGAVKLEILSDRTQTIRASISDVQFELMLSIALVVMVSFLFLRTVSATL 360 + LLP LQ S+P A+ ++++ DRT TIRAS+ + +F L+LS+ALV+MV FLFLR ATL Sbjct: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 Query: 361 IPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTIATGFVIDDAIVVVENIQRHLENGDSP 420 IP+VAVP+SL+GTFGVMYLAGFSL+NL+LMALTIATGFV+DDAIVV+ENI RH+E+G P Sbjct: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 Query: 421 MEAAFKGSREIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREFSITLAVSILVSMLVSLT 480 +AA G+RE+GFT++S++ SLIAV IP+L M +VGRLFREF+ITL+V+ILVS++VSLT Sbjct: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 Query: 481 LTPMLCAYLLRHIPPEQEGRFAR---W-------SAGRFDRLLQAYERSLGWVLGHQRLT 530 TPM+CA LLRH P E R R W SA F+ +L AY+R+L W L L Sbjct: 481 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540 Query: 531 LLVAAASLVLTALLYMAVPKGFFPTQDTGQLLGVTTAPQNVSFAEMSRRQQALAAVIQQD 590 +L+ A++ L LY A+PKGFFP QDTG+L+G Q +SF M + +++ D Sbjct: 541 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600 Query: 591 PAVKSISSVVGVDGANNTSLSNGRLQIELKSFDERSDRAPVIIERLRAAAAQVPGIQLYL 650 PAV + + G N G + + LK ER D A ++ RLR A+V G +++L Sbjct: 601 PAVSDVVAFTGGQRRN-----GGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVFL 655 Query: 651 TASQDLSVDDQVTPSQYQLTLSTPTQSDLEAWAPRLVAALAKHPELRDITSNLQNSSPVA 710 QD+ + + + SQY+ +L + L W P++ AL+ EL DI+++ Q++ Sbjct: 656 VPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQT 715 Query: 711 YVDMNRMALARYGLTATDVDTALYNAYGQRLVSTIFTQANQYRVVLEVAPQFRQDVSAFD 770 + ++R R G+T +D+ L + +GQR +STI++ NQY VV+E APQ+ Q Sbjct: 716 TLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLR 775 Query: 771 QLYLANANSTSSSSSSTSSSSSSSSSSSSSSSSSASSTSSSTSTSSSTTLTPMVPLRNVA 830 Y++ A S S+ S +TSS S+ + S+S ++ + + + ST+ S +PL + Sbjct: 776 DTYVSLAGS-SNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSR----QIPLAAFS 830 Query: 831 RIQERVGYQSRSRLNQTPAVTLSFNLGKGYSLEQARAAVSEAVQEIGLPDTISLRYQGAA 890 R + S S Q A TLSFNL +G SL QA AA+ A+ ++G+P + + G A Sbjct: 831 RFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTA 890 Query: 891 QAFASATSNTLWLILAAVITMYIVLGVLYESFIHPVTVLSTLPSAAIGALLALLLTGSDF 950 AF S+TS+ LIL A++ +YIVLG+LYES IHP+T++STLPSA +GALLAL++TG+DF Sbjct: 891 NAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDF 950 Query: 951 SLIALIGVILLIGIVKKNAIMMIDFALQAQK-EGKSAFDAIQQACVMRFRPIMMTTMAAL 1009 SLIALIGVILLIGIVKKNAIMM+DFA+ A++ G S DAI +AC +RFRPIMMTTMAAL Sbjct: 951 SLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAAL 1010 Query: 1010 LGAVPLMLATGSGAELRRPLGLVIVGGLLLSQLLTLFTTPVIYLFFDRASVAVKRRWAAR 1069 LGA+PL + G GAELR+PLG+ IVGGL++SQLLTL+TTPV+YL+ +R S KRR+ + Sbjct: 1011 LGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRK 1070 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/1084 (46%), Positives = 719/1084 (66%), Gaps = 61/1084 (5%) Query: 1 MNPSSLFIRRPVATLLLMIAVVLSGMFAYRTLSISALPQVDYPTIQVTTLYPGAGPEVMT 60 M+ S+ FI+RP+ T LL IA++L G+ + L ++ LPQVD+PTIQVT PG PE M Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 TAVTAPLERQLGQMAGLAQMYSTSAGGASVITLKFNLALSLDVAEQEVQAAINAANALLP 120 + V PLERQ +AGL+QM S S G++ ITL+F+L ++D A +VQAAINA+ LP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 SGLPNPPTYKKVNPADTAVLTLAATSESLPLTQVQDLVNTRIALKLSQVSGVGLVTLAGG 180 + LPNPPT++K+NPAD+ ++ ++ SE+LPLT V D + +A ++SQ+SGVGLV + G Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 QQLAIRVRANPTALAAHGLTLENLYNVINNGNVNGSKGGFDGPAHSVTIDANDQLRSAEE 240 Q+ A+R++ +P LA GL+LE++ VI VN KG DG + T+ NDQL AE+ Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 YGNLVVAYQNGQALFLRDVASIDQAPENIYQAAWAG------------NKPAIVINIQRQ 288 + ++V+A++NG + ++D+ PEN AAWA N +IV+ I +Q Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGRSIVLAITKQ 300 Query: 289 PGANVVQVVDSIKALLPSLQQSLPGAVKLEILSDRTQTIRASISDVQFELMLSIALVVMV 348 PGANV++ V IKA +P L+ ++P A+ + L DRTQTIRAS+ DV+F L+L+IALVVMV Sbjct: 301 PGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV 360 Query: 349 SFLFLRTVSATLIPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTIATGFVIDDAIVVVE 408 F+FLR V+ATLIPSV VPL+++GT GVMY+ G+SL+NL+LMALTIA GFV+DDAIV++E Sbjct: 361 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE 420 Query: 409 NIQRHLENGDSPMEAAFKGSREIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREFSITLA 468 NI R++E G +P+EAA KG+ EIGFTIIS++ SL+AV IPLL MG +VGRLFREF++T+ Sbjct: 421 NIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480 Query: 469 VSILVSMLVSLTLTPMLCAYLLRHIPPEQEGRFARWSAGRFDRLLQAYERSLGWVLGHQR 528 ++I VS+++SLTLTPMLC+ L++ ++ G+ +W FD +L Y+R L V+ HQ Sbjct: 481 LTIAVSVIISLTLTPMLCSRFLKNEHGQRHGKLYQWFERCFDAMLAGYKRGLDVVMKHQF 540 Query: 529 LTLLVAAASLVLTALLYMAVPKGFFPTQDTGQLLGVTTAPQNVSFAEMSRRQQALAAVIQ 588 +TL+ A+L LTA+L++ +PKGFFP QD G ++G + Q+ S A M R +A V++ Sbjct: 541 ITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMHERLLKVAEVVR 600 Query: 589 QDPAVKSISSVVGVDGANNTSLSNGRLQIELKSFDE-RSDRAPVIIERLRAAAAQVPGIQ 647 QDP V + G +T+ + G+ I LK D+ R+ A II RLR A++ G+ Sbjct: 601 QDPDVIGFAMSAG-----STTFNTGQFFIALKPKDQGRTTNADEIIARLRPKVARIEGVN 655 Query: 648 LYLTASQDLSVDDQVTPSQYQLTLSTPTQSDLEAWAPRLVAALAKHPELRDITSNLQNSS 707 L++ ASQD++V +++ +QYQ T++ +L WAPR++ + P+L D+ S+ QN + Sbjct: 656 LFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTDVASDQQNQA 715 Query: 708 PVAYVDMNRMALARYGLTATDVDTALYNAYGQRLVSTIFTQANQYRVVLEVAPQFRQDVS 767 A + ++R + +G++ + +D +Y+A GQR V+ FTQ N YRV+LEV P ++D + Sbjct: 716 AAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPALQKDPA 775 Query: 768 AFDQLYLANANSTSSSSSSTSSSSSSSSSSSSSSSSSASSTSSSTSTSSSTTLTPMVPLR 827 FD+LYL TS T VPL Sbjct: 776 LFDKLYL---------------------------------TSPLTGQQ--------VPLS 794 Query: 828 NVARIQ-ERVGYQSRSRLNQTPAVTLSFNLGKGYSLEQARAAVSEAVQEIGLPDTISLRY 886 +I + Y S S +Q PAVT+SFNL KG SL +A + + ++G+P T+ + Sbjct: 795 TFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKTKDQMGVPQTLVGNF 854 Query: 887 QGAAQAFASATSNTLWLILAAVITMYIVLGVLYESFIHPVTVLSTLPSAAIGALLALLLT 946 QG A+AF + S+ +LI AA+I +YIVLG+LYES+IHP+T+LSTLPSA +GALL L+ Sbjct: 855 QGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLILMAG 914 Query: 947 GSDFSLIALIGVILLIGIVKKNAIMMIDFALQAQK-EGKSAFDAIQQACVMRFRPIMMTT 1005 G D S+IALIG+ILLIGIVKKN IMMIDFAL A++ +G AI QAC++RFRPIMMTT Sbjct: 915 GYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIYQACLLRFRPIMMTT 974 Query: 1006 MAALLGAVPLMLATGSGAELRRPLGLVIVGGLLLSQLLTLFTTPVIYLFFDRASVAVKRR 1065 M ALL +PLML G+G+ELRRPLG +VGGL+LSQ LTLFTTPV+YL+ DRA R+ Sbjct: 975 MCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYWYMRK 1034 Query: 1066 WAAR 1069 AR Sbjct: 1035 KEAR 1038 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 301/1089 (27%), Positives = 520/1089 (47%), Gaps = 111/1089 (10%) Query: 6 LFIRRPVATLLLMIAVVLSGMFAYRTLSISALPQVDYPTIQVTTLYPGAGPEVMTTAVTA 65 FI RP+ ++ I ++L GM + R+LS+ P + P + + Y GA + + +VT Sbjct: 4 FFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQ 63 Query: 66 PLERQLGQMAGLAQMYSTSAGGAS-VITLKFNLALSLDVAEQEVQAAINAANALLPSGLP 124 +E+Q+ + L M ++S+ S ++L F + DVA+ +VQ + A LP + Sbjct: 64 VIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQ 123 Query: 125 NPP-TYKKVNPADTAVLTLAATSESLPLTQVQDLVNTRIALKLSQVSGVGLVTLAGGQQL 183 N T K + VL+L + + + D +++ + ++S+V GVG VT A G Sbjct: 124 NNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVT-AFGTNY 182 Query: 184 AIRVRANPTALAAHGLTLENLYNVINNGNVNGSKGGFDG-PAH-----SVTIDANDQLRS 237 A+R+ +P L + L ++ + + N S G PA + TI A +L + Sbjct: 183 AMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLTT 242 Query: 238 AEEYGNLVVAYQ-NGQALFLRDVASIDQAPENIYQAAWAGNKPAIVINIQRQPGANVVQV 296 +E+ N++V +G + L DVA ++ E+ A+ KP+ + IQ GAN + Sbjct: 243 PDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANALAT 302 Query: 297 VDSIKALLPSLQQSLPGAVKLE--ILSDRTQTIRASISDVQFELMLSIALVVMVSFLFLR 354 D++K L L+ P ++KL+ I D T +R S+ +V L+ +I LVV++ +LFL+ Sbjct: 303 ADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLFLQ 362 Query: 355 TVSATLIPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTIATGFVIDDAIVVVENIQRHL 414 + AT IP++ VP+ L+GTFG++ + G+S+N LT+ + +A G ++DDAIVVVEN++R + Sbjct: 363 NIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERLM 422 Query: 415 -ENGDSPMEAAFKGSREIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREFSITLAVSILV 473 E SP EA K +EI ++ + L AV IP+ F G G ++R+FSIT+ ++ + Sbjct: 423 SEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMAL 482 Query: 474 SMLVSLTLTPMLCAYLLR-----HIPPEQEGRFARWSAGRFDRLLQAYERSLGWVLGHQR 528 S++V+LTLTP LCA LL+ H+ Q+GRF W FDR Y+ + +L + Sbjct: 483 SVMVALTLTPALCATLLKPHAGGHV---QQGRFFTWFNRSFDRSATRYQGGVAGLLKRGK 539 Query: 529 LTLLVAAASLVLTALLYMAVPKGFFPTQDTGQLLGVTTAPQNVSFAEMSRRQQALAAVIQ 588 LL+ A V A+L+M +P F P +D G L+ P + + + + + Sbjct: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 Query: 589 QDP-AVKSISSVVGVDGANNTSLSNGRLQIELKSFDERS---DRAPVIIERLRAAAAQVP 644 P +V+S+ ++VG G S + R I LK +++R+ A ++ R A +++ Sbjct: 600 NKPESVESVLAIVGA-GVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIR 658 Query: 645 GIQLYL-----------TASQDLSVDD----------QVTPSQYQLTLSTPTQSDLEAWA 683 G +++L ++ DL + D Q QL S +++ Sbjct: 659 GARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVR--- 715 Query: 684 PRLVAALAKHPELRDITSNLQNSSPVAYVDMNRMALARYGLTATDVDTALYNAYGQRLVS 743 L P+LR VA D AL+ + +D++ L A G V+ Sbjct: 716 ---TTGLDDTPQLR-----------VAIDDRKADALS---IATSDINATLATAMGGTYVN 758 Query: 744 TIFTQANQYRVVLEVAPQFRQDVSAFDQLYLANANSTSSSSSSTSSSSSSSSSSSSSSSS 803 + +V ++ FR ++ Y+ NA S Sbjct: 759 DFLSNGRVKKVYVQGDSAFRMQADDLNRWYVRNAASQ----------------------- 795 Query: 804 SASSTSSSTSTSSSTTLTPMVPLRNVARIQERVGYQSRSRLNQTPAVTLSFNLGKGYSLE 863 MVP Q G R N + + G S Sbjct: 796 -------------------MVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSG 836 Query: 864 QARAAVSEAVQEIGLPDTISLRYQGAAQAFASATSNTLWLILAAVITMYIVLGVLYESFI 923 A A V + V + LP I + G++ + + L +++ +++ L LYES+ Sbjct: 837 TAMAEVEKLVAQ--LPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWS 894 Query: 924 HPVTVLSTLPSAAIGALLALLLTGSDFSLIALIGVILLIGIVKKNAIMMIDFALQAQKEG 983 P V+ +P IG +L + G + +G++ +G+ KNAI++++FA Q + G Sbjct: 895 VPFAVILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESG 954 Query: 984 KSAFDAIQQACVMRFRPIMMTTMAALLGAVPLMLATGSGAELRRPLGLVIVGGLLLSQLL 1043 KS ++A +A +R RPI+MT++A + G +PL +A+G+G+ RR +G ++GG+L + LL Sbjct: 955 KSLWEATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLL 1014 Query: 1044 TLFTTPVIY 1052 +F P+ Y Sbjct: 1015 GIFFVPLFY 1023 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust. Identities = 320/1085 (29%), Positives = 526/1085 (48%), Gaps = 100/1085 (9%) Query: 6 LFIRRPVATLLLMIAVVLSGMFAYRTLSISALPQVDYPTIQVTTLYPGAGPEVMTTAVTA 65 FI RP+ +L I V+L+G+ + TL I+ P + P I +T YPGA + + VT Sbjct: 4 FFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDTVTQ 63 Query: 66 PLERQLGQMAGLAQMYSTSAGGASV-ITLKFNLALSLDVAEQEVQAAINAANALLPSGLP 124 +E+++ + L+ M STS SV ITL F + D A+ +VQ ++ A LLPS + Sbjct: 64 IIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPSEVQ 123 Query: 125 NPPTYKKVNPADTAVLT-LAATSE--SLPLTQVQDLVNTRIALKLSQVSGVGLVTLAGGQ 181 V + T L LA TSE S+ + + D V + +S+V GVG TL G Sbjct: 124 QQGI--TVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFG-S 180 Query: 182 QLAIRVRANPTALAAHGLTLENLYNVINNGNVNGSKGGFDG-PAH-----SVTIDANDQL 235 Q A+R+ +P L ++GLT ++ N I N S G G PA + TI A +L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 236 RSAEEYGNLVVAYQNGQA-LFLRDVASIDQAPENIYQAAWAGNKPAIVINIQRQPGANVV 294 R+A+++ N+V+ G A + LRDVA I+ E+ KPA + I+ GAN + Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 295 QVVDSIKALLPSLQQSLPGAVKLEILSDRTQTIRASISDVQFELMLSIALVVMVSFLFLR 354 V +I + L++ P +K++ D T +R SI +V L+ ++ LV +V +LFL+ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 355 TVSATLIPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTIATGFVIDDAIVVVENIQRHL 414 ATLIP++AVP+ L+GTFGV+ + GF++N LT+ A+ +A G ++DDAIVVVEN++R + Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 415 -ENGDSPMEAAFKGSREIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREFSITLAVSILV 473 E G P +A K +I ++ + L AV +P+ F G ++R+FSIT+ ++ + Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 474 SMLVSLTLTPMLCAYLLRHIPPEQEGR------FARWSAGRFDRLLQAYERSLGWVLGHQ 527 S+LV+L LTP LCA LL+ P +G F W +FDR Y+ + +LG Sbjct: 481 SVLVALVLTPALCATLLK---PAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRG 537 Query: 528 RLTLLVAAASLVLTALLYMAVPKGFFPTQDTGQLLGVTTAPQNVSFAEMSR--RQQALAA 585 + A L L +M +P GF P +D G L + P + A RQ Sbjct: 538 WRYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHF 597 Query: 586 VIQQDPAVKSISSVVGVDGANNTSLSNGRLQIELKSFDERSDRAPVI------------- 632 ++ Q AV + +V G A + + G I+LK +DER + P + Sbjct: 598 LVDQKEAVSGVFAVSGFSFAGSGQ-NMGFAFIKLKPWDER--KGPGLSVTDVAAKAGAAF 654 Query: 633 --IERLRAAAAQVPGI-QLYLTASQDLSVDDQVTPSQYQLTLSTPTQSDLEAWAPRLVAA 689 I R A P + +L DL + D+ L + +L+ Sbjct: 655 ANIRDARVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQAR----------NQLLGE 704 Query: 690 LAKHPELRDITSNLQNSSPVAYVDMNRMALARYGLTATDVDTALYNAYGQRLVSTIFTQA 749 L + L + N +P + ++ G+ +D++ + A+G V+ + Sbjct: 705 LMQDKRLVAVRPNGLEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKG 764 Query: 750 NQYRVVLEVAPQFRQDVSAFDQLYLANANSTSSSSSSTSSSSSSSSSSSSSSSSSASSTS 809 +V+L+ Q+R S D+ Y+ N+ T S+ S++S +S S Sbjct: 765 RVKKVMLQGDAQYRMLPSDVDRWYVRNSAGTMVPFSAFSTASWTSGSP------------ 812 Query: 810 SSTSTSSSTTLTPMVPLRNVARIQERVGYQSRSRLNQTPAVT-LSFNLGKGYSLEQARAA 868 R++ R N P++ L L S +A A Sbjct: 813 ---------------------RLE---------RYNGVPSMEILGMALPGAASSGEAMAI 842 Query: 869 VSEAVQEIGLPDTISLRYQGAAQAFASATSNTLWLILAAVITMYIVLGVLYESFIHPVTV 928 V A+ + +P I + G + +++ T L +++ +++ L LYES+ P +V Sbjct: 843 VEAALAK--MPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 929 LSTLPSAAIGALLALLLTGSDFSLIALIGVILLIGIVKKNAIMMIDFALQAQKEGKSAFD 988 + +P GALL +LT + +G++ IG+ KNAI++++FA + GKS + Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 989 AIQQACVMRFRPIMMTTMAALLGAVPLMLATGSGAELRRPLGLVIVGGLLLSQLLTLFTT 1048 A +A MR RPI+MT++A +LG +P++L +G+GA + LG ++GG+L +L +F Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1049 PVIYL 1053 P+ ++ Sbjct: 1021 PLFFV 1025 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,783,925 Number of extensions: 104087 Number of successful extensions: 586 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 521 Number of HSP's successfully gapped: 27 Length of query: 1077 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 982 Effective length of database: 1,170,045 Effective search space: 1148984190 Effective search space used: 1148984190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)