BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2682.p (1043 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 1100 0.0 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 904 0.0 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 897 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 397 e-111 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 396 e-111 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/1076 (52%), Positives = 757/1076 (70%), Gaps = 50/1076 (4%) Query: 1 MNLSRPFILRPVATLLLSLALTLLGALAYRMLPVAPLPQVDFPTIMVTASLAGASPETMA 60 MN+S PFI RP+AT LL++ + L G +A+R+LPV+PLPQVD+PTI ++AS+ GASPETMA Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 ATIAAPLERAMGQIAGITEMTSSSSQGSTNVIVQFDLERDIDGAARDVQAAINAARSLLP 120 AT+A PLERAMG IAG+TEMTS+SSQ ST + +QFDL RDIDGAARDVQAA+NAAR+LLP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 SSLKTLPTYRKANPADAPILLLALTSKTVDKGKLYDLASSKLQQTIAQVQGVGQVSLMGS 180 + + + PTYRK NPADAPIL+LA+TS T+ +G++YD A S + Q ++QV+GVGQVS+ GS Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 ALPAVRIELQPQQLSHYGISLDTVRQVVANATTNLPKGELQGEGLHWWVDANGQLTKASD 240 + PAVRIEL P L+ YGI VR VA N PKG L+ + +W + AN Q A++ Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 YTNLVVSYQNGAAVKLSDVARVYDSVQDQYVAGYFNDSPSVMMGITRSSGANMLATIDAI 300 Y L+VSY+NG V++ DVA V DSV D AG N PSV++ I R GAN++ T+D + Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 Query: 301 KAQLPIMQKMLPKEVQLSLAMDRSPSIRGSLRETELTLLISTLLVIAVVFLFLRNARAVL 360 + LP +Q +P + + + +DR+P+IR SL+ETE TL++S LVI VVFLFLRNARA L Sbjct: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 Query: 361 IPAVALPISLIGTCAAMYLLGYSLDTLSLMALIIATGFVVDDAIVVLENISRHLEEGAPP 420 IPAVA+P+SLIGT MYL G+SLD LSLMAL IATGFVVDDAIVVLENISRH+E G P Sbjct: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 Query: 421 LKAALDGSKEVGFTVLSMTASLIAVFLPILLMGSIVGRLFREFAVTLSVSLVLSMIVSLT 480 KAAL G++EVGFTVLSM+ SLIAVF+PIL+M IVGRLFREFA+TLSV++++S++VSLT Sbjct: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 Query: 481 LTPMLCSRLLRAHKHDASGAPVQPNVFYRAIERVLN---AVSD----GYASSLEWVMRHK 533 TPM+C++LLR HD + + + ++++ + A+ + Y +L W +R Sbjct: 481 TTPMMCAQLLR---HDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAA 537 Query: 534 RLTLLSLVLTVALNLFLFTAVQKGFFPDQDTGMLMGQMRADQAASFQSVHPQLLAFSRLI 593 L +L L+ T+ALN++L+ A+ KGFFP QDTG L+G +R DQA SFQ++ +L F ++ Sbjct: 538 PLMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIV 597 Query: 594 QSDPDVASVMASTGGGAFGSRNTANFFVSLKDSSQRKSTATEIANRLTRKASGVPGASLF 653 ++DP V+ V+A TGG RN +V+LK S+RK +A ++ RL K + V GA +F Sbjct: 598 RADPAVSDVVAFTGG---QRRNGGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVF 654 Query: 654 LMAGQDLRMGGRSANATYQYSLQSDSLDTLREWSPKVYAVLRKLPELTSVDTDAQSGGQA 713 L+ QD+R+G R +++ Y+YSL+SD + LR W PK+ L L EL + TD Q G Sbjct: 655 LVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQ 714 Query: 714 VKLVIDRIAARRLGLEMTNIDDFLNNAFSQRQVATQYQALNQYYTILGLAPQYTQDPEVL 773 L IDR A R G+ ID L++ F QRQ++T Y +NQY+ ++ APQY Q PE L Sbjct: 715 TTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETL 774 Query: 774 KQLFV--------------------LNSAG--NA---------------VPLSAFARLQS 796 + +V L+++G NA +PL+AF+R + Sbjct: 775 RDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEP 834 Query: 797 ASAPLAVAHQNQSATTTIAFNLADGVSLQQAKAAIDAAVISLGLPGSIHGGMQGTAQAFV 856 + L+V+H+ Q +T++FNLA+GVSL QA AAID A+ LG+P ++ G GTA AF Sbjct: 835 TTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQ 894 Query: 857 AMASAMPWLILAALLAVYIVLGMLYESWIHPITILSTLPSAGVGALLLLLATHTQFTVIA 916 + S+ P LIL ALLAVYIVLG+LYES IHPITI+STLPSAGVGALL L+ T T F++IA Sbjct: 895 SSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIA 954 Query: 917 LIGVLLLIGIVKKNAILMVDFALHVERQHDWAAERAILEACRMRLRPILMTTMAAFFGAL 976 LIGV+LLIGIVKKNAI+MVDFA+ ER + AI EAC++R RPI+MTTMAA GA+ Sbjct: 955 LIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAI 1014 Query: 977 PMVLQTGGDAALRRPLGLTICGGLALSQLLTLYTTPVVYVYMDRMGSAAKRLWRRR 1032 P+ + G A LR+PLG++I GGL +SQLLTLYTTPVVY+YM+R+ S +KR + R+ Sbjct: 1015 PLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRK 1070 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/1048 (45%), Positives = 691/1048 (65%), Gaps = 29/1048 (2%) Query: 1 MNLSRPFILRPVATLLLSLALTLLGALAYRMLPVAPLPQVDFPTIMVTASLAGASPETMA 60 M++S FI RP+ T LL++A+ L+G + +LPVAPLPQVDFPTI VTA L G SPETMA Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 ATIAAPLERAMGQIAGITEMTSSSSQGSTNVIVQFDLERDIDGAARDVQAAINAARSLLP 120 + +A PLER IAG+++MTS S+ GST + +QFDL R+ID AA DVQAAINA+ LP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 SSLKTLPTYRKANPADAPILLLALTSKTVDKGKLYDLASSKLQQTIAQVQGVGQVSLMGS 180 ++L PT+RK NPAD+PI+++++ S+ + + D A + L Q I+Q+ GVG V++ G Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 ALPAVRIELQPQQLSHYGISLDTVRQVVANATTNLPKGELQGEGLHWWVDANGQLTKASD 240 PAVRI++ P +L+ G+SL+ +R V+A T N PKG + G + V N QL KA Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 YTNLVVSYQNGAAVKLSDVARVYDSVQDQYVAGY------------FNDSPSVMMGITRS 288 + ++V++++NGA +++ D+ D ++ +A + + S+++ IT+ Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGRSIVLAITKQ 300 Query: 289 SGANMLATIDAIKAQLPIMQKMLPKEVQLSLAMDRSPSIRGSLRETELTLLISTLLVIAV 348 GAN++ T+ IKA +P ++ +P + ++ +DR+ +IR S+ + E TL+++ LV+ V Sbjct: 301 PGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV 360 Query: 349 VFLFLRNARAVLIPAVALPISLIGTCAAMYLLGYSLDTLSLMALIIATGFVVDDAIVVLE 408 +F+FLRN A LIP+V +P++++GT MY++GYSLD LSLMAL IA GFVVDDAIV+LE Sbjct: 361 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE 420 Query: 409 NISRHLEEGAPPLKAALDGSKEVGFTVLSMTASLIAVFLPILLMGSIVGRLFREFAVTLS 468 NI R++EEG PL+AAL G+ E+GFT++S++ SL+AVF+P+LLMG IVGRLFREFAVT++ Sbjct: 421 NIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480 Query: 469 VSLVLSMIVSLTLTPMLCSRLLRAHKHDASGAPVQPNVFYRAIERVLNAVSDGYASSLEW 528 +++ +S+I+SLTLTPMLCSR L+ G Y+ ER +A+ GY L+ Sbjct: 481 LTIAVSVIISLTLTPMLCSRFLKNEHGQRHGK------LYQWFERCFDAMLAGYKRGLDV 534 Query: 529 VMRHKRLTLLSLVLTVALNLFLFTAVQKGFFPDQDTGMLMGQMRADQAASFQSVHPQLLA 588 VM+H+ +TL+S + T+AL LF + KGFFP QD G+++G + Q S ++H +LL Sbjct: 535 VMKHQFITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMHERLLK 594 Query: 589 FSRLIQSDPDVASVMASTGGGAFGSRNTANFFVSLKDSSQ-RKSTATEIANRLTRKASGV 647 + +++ DPDV S G F NT FF++LK Q R + A EI RL K + + Sbjct: 595 VAEVVRQDPDVIGFAMSAGSTTF---NTGQFFIALKPKDQGRTTNADEIIARLRPKVARI 651 Query: 648 PGASLFLMAGQDLRMGGRSANATYQYSLQSDSLDTLREWSPKVYAVLRKLPELTSVDTDA 707 G +LF+ A QD+ +GGR + YQY++ LD L W+P++ R+LP+LT V +D Sbjct: 652 EGVNLFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTDVASDQ 711 Query: 708 QSGGQAVKLVIDRIAARRLGLEMTNIDDFLNNAFSQRQVATQYQALNQYYTILGLAPQYT 767 Q+ A + IDR A G+ + ID + +A QRQVA + +N Y IL + P Sbjct: 712 QNQAAAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPALQ 771 Query: 768 QDPEVLKQLFVLNS-AGNAVPLSAFARLQ-SASAPLAVAHQNQSATTTIAFNLADGVSLQ 825 +DP + +L++ + G VPLS F ++ S ++ L+++HQ+Q TI+FNLA GVSL Sbjct: 772 KDPALFDKLYLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLG 831 Query: 826 QAKAAIDAAVISLGLPGSIHGGMQGTAQAFVAMASAMPWLILAALLAVYIVLGMLYESWI 885 +A I +G+P ++ G QGTA+AF S+ P+LI AAL+AVYIVLG+LYES+I Sbjct: 832 EAVDVIQKTKDQMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYI 891 Query: 886 HPITILSTLPSAGVGALLLLLATHTQFTVIALIGVLLLIGIVKKNAILMVDFALHVERQH 945 HP+TILSTLPSAGVGALL+L+A +VIALIG++LLIGIVKKN I+M+DFAL ER Sbjct: 892 HPLTILSTLPSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQ 951 Query: 946 DWAAERAILEACRMRLRPILMTTMAAFFGALPMVLQTGGDAALRRPLGLTICGGLALSQL 1005 E+AI +AC +R RPI+MTTM A LP++L G + LRRPLG + GGL LSQ Sbjct: 952 GMKPEQAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQA 1011 Query: 1006 LTLYTTPVVYVYMDRMGSAAKRLWRRRR 1033 LTL+TTPVVY+Y+DR W R+ Sbjct: 1012 LTLFTTPVVYLYLDR-----AHYWYMRK 1034 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1037 (46%), Positives = 684/1037 (65%), Gaps = 15/1037 (1%) Query: 1 MNLSRPFILRPVATLLLSLALTLLGALAYRMLPVAPLPQVDFPTIMVTASLAGASPETMA 60 MN SR FILRPVAT LL LA+ L+G +AYR+LP++ LP+VD+PTI V GASP+ M Sbjct: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 ATIAAPLERAMGQIAGITEMTSSSSQGSTNVIVQFDLERDIDGAARDVQAAINAARSLLP 120 +++ APLER GQ+ G+ +M+S+SS G++ + +QF+L+ +D A ++VQAAINA +LLP Sbjct: 61 SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120 Query: 121 SSLKTLPTYRKANPADAPILLLALTSKTVDKGKLYDLASSKLQQTIAQVQGVGQVSLMGS 180 S L P Y K NPAD PI+ LA+TS T+ K+ DL +++ Q I+Q+ GVG VSL G Sbjct: 121 SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180 Query: 181 ALPAVRIELQPQQLSHYGISLDTVRQVVANATTNLPKGELQGEGLHWWVDANGQLTKASD 240 PAVR++L P+ ++ G++LD VR + NA N KG G +DAN QL A + Sbjct: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Query: 241 YTNLVVSYQNGAAVKLSDVARVYDSVQDQYVAGYFNDSPSVMMGITRSSGANMLATIDAI 300 Y NL+++Y+NGA +++SDVA V D ++ + + N P+V++ I R GAN++A +D+I Sbjct: 241 YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300 Query: 301 KAQLPIMQKMLPKEVQLSLAMDRSPSIRGSLRETELTLLISTLLVIAVVFLFLRNARAVL 360 K LP +Q LP + + + DR+ +IR S+ + + LL+S LV+ V+F+FLRN A + Sbjct: 301 KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATI 360 Query: 361 IPAVALPISLIGTCAAMYLLGYSLDTLSLMALIIATGFVVDDAIVVLENISRHLEEGAPP 420 IP+VA+P+SL+GT A MYL G+S++ L+LMAL IATGFVVDDAIV++ENISR++EEG P Sbjct: 361 IPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 Query: 421 LKAALDGSKEVGFTVLSMTASLIAVFLPILLMGSIVGRLFREFAVTLSVSLVLSMIVSLT 480 ++AAL G++++GFT++S+T SLIAV +P+L MG +VGRLF EFAVTL+VS+++S +VSLT Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 Query: 481 LTPMLCSRLLRAHKHDASGAPVQPNVFYRAIERVLNAVSDGYASSLEWVMRHKRLTLLSL 540 LTPM+C+RLLR + G FY ++ + + Y L+WV+ ++LTLL Sbjct: 481 LTPMMCARLLRHQPEEQQGW------FYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVA 534 Query: 541 VLTVALNLFLFTAVQKGFFPDQDTGMLMGQMRADQAASFQSVHPQLLAFSRLIQSDPDVA 600 T+ L + L+ V KGFFP QDTG++ G A Q+ SF ++ + ++++ DP V Sbjct: 535 AATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDPAVE 594 Query: 601 SVMASTG-GGAFGSRNTANFFVSLKDSSQRKSTATEIANRLTRK-ASGVPGASLFLMAGQ 658 S+ + G G + N+ ++LK R+ +AT++ RL K A+ VPG +L++ Q Sbjct: 595 SLTSFIGVDGTNATLNSGRMLINLKPHDVREVSATDVIRRLQGKLAAEVPGITLYMQPVQ 654 Query: 659 DLRMGGRSANATYQYSLQSDSLDTLREWSPKVYAVLRKLPELTSVDTDAQSGGQAVKLVI 718 DL + + YQ++L+ L W PK+ A L++ EL V T+ Q G + I Sbjct: 655 DLTIEDSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQAYIEI 714 Query: 719 DRIAARRLGLEMTNIDDFLNNAFSQRQVATQYQALNQYYTILGLAPQYTQDPEVLKQLFV 778 DR AA RLG+ ID+ L NAF QR ++T Y NQY ++ + P++ P L +++ Sbjct: 715 DRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALDSIYL 774 Query: 779 LNSAGNAVPLSAFARLQSASAPLAVAHQNQSATTTIAFNLADGVSLQQAKAAIDAAVISL 838 + S G VPLS+ A + +APL V H Q T++FNLA G SL +A AI AA + Sbjct: 775 VTSGGGKVPLSSIATVTERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEI 834 Query: 839 GLPGSIHGGMQGTAQAFVAMASAMPWLILAALLAVYIVLGMLYESWIHPITILSTLPSAG 898 G+P S QG A AF A S WLILAA++ +YIVLG+LYES+IHPITILSTLPSAG Sbjct: 835 GMPASTVTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAG 894 Query: 899 VGALLLLLATHTQFTVIALIGVLLLIGIVKKNAILMVDFALHVERQHDWAAERAILEACR 958 VGALL L+ + T +I +IG++LLIGIVKKNAI+M+DFAL ER + AI +AC Sbjct: 895 VGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACL 954 Query: 959 MRLRPILMTTMAAFFGALPMVLQTGGDAALRRPLGLTICGGLALSQLLTLYTTPVVYVYM 1018 +R RPILMTTMAA GALP++L TG + LR+PLG+T+ GGL +SQ+LTL+TTPV+Y+ Sbjct: 955 LRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGF 1014 Query: 1019 DRMGSAAKRLWRRRRPR 1035 D +G RR R R Sbjct: 1015 DSLG-------RRLRAR 1024 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust. Identities = 312/1071 (29%), Positives = 538/1071 (50%), Gaps = 70/1071 (6%) Query: 3 LSRPFILRPVATLLLSLALTLLGALAYRMLPVAPLPQVDFPTIMVTASLAGASPETMAAT 62 ++R FI RP+ ++++ + L G ++ R L + P + P + + A+ GAS +T+ + Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 63 IAAPLERAMGQIAGITEMTSSSSQGSTNVI-VQFDLERDIDGAARDVQAAINAARSLLPS 121 + +E+ M + + M++SSS + + + F + D A VQ + + LP Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 122 SLKTLPTYRKANPADAPILLLALTSK-----TVDKGKLYDLASSKLQQTIAQVQGVGQVS 176 +++ D +++L+LTS ++D G D SS L I++V+GVG V+ Sbjct: 121 AVQNNGVTVTKASTDI-LMVLSLTSDDPRITSIDIG---DFISSTLTDQISRVEGVGDVT 176 Query: 177 LMGSALPAVRIELQPQQLSHYGISLDTVRQVVANATTNLPKGELQ------GEGLHWWVD 230 G+ A+RI + P +L Y + + + T + GE+ G+ ++ + Sbjct: 177 AFGTNY-AMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATIT 235 Query: 231 ANGQLTKASDYTNLVV-SYQNGAAVKLSDVARVYDSVQDQYVAGYFNDSPSVMMGITRSS 289 A +LT ++ N++V S +G+ VKLSDVARV + VA N PS + I ++ Sbjct: 236 ARSKLTTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLAT 295 Query: 290 GANMLATIDAIKAQLPIMQKMLPKEVQL--SLAMDRSPSIRGSLRETELTLLISTLLVIA 347 GAN LAT DA+K +L ++ P ++L ++A D +P +R SL E TL+ + +LV+ Sbjct: 296 GANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVL 355 Query: 348 VVFLFLRNARAVLIPAVALPISLIGTCAAMYLLGYSLDTLSLMALIIATGFVVDDAIVVL 407 +++LFL+N RA IPA+ +P+ L+GT + + GYS++TL++ +++A G +VDDAIVV+ Sbjct: 356 IMYLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVV 415 Query: 408 ENISRHL-EEGAPPLKAALDGSKEVGFTVLSMTASLIAVFLPILLMGSIVGRLFREFAVT 466 EN+ R + EE P +A +E+ ++ + L AVF+P+ G G ++R+F++T Sbjct: 416 ENVERLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSIT 475 Query: 467 LSVSLVLSMIVSLTLTPMLCSRLLRAHKHDASGAPVQPNVFYRAIERVLNAVSDGYASSL 526 + ++ LS++V+LTLTP LC+ LL+ H +G VQ F+ R + + Y + Sbjct: 476 IVSAMALSVMVALTLTPALCATLLKPH----AGGHVQQGRFFTWFNRSFDRSATRYQGGV 531 Query: 527 EWVM-RHKRLTLLSLVLTVALNLFLFTAVQKGFFPDQDTGMLMGQMRADQAASFQSVHPQ 585 ++ R KR L+ ++ VA+ + LF + F P++D G+LM Q++ A+ + Sbjct: 532 AGLLKRGKRGLLMYALIAVAMAV-LFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATV 590 Query: 586 LLAFSRLIQSDPD-VASVMASTGGGAFG-SRNTANFFVSLKDSSQRKS---TATEIANRL 640 + + P+ V SV+A G G G S+N A F+ LKD QR +A+E+ R Sbjct: 591 VKTVQEYFMNKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRA 650 Query: 641 TRKASGVPGASLFLMAGQDLRMGGRSANATYQYS-LQSDSLDTLREWSPKVYAVLRKLPE 699 S + GA +FLM +R G+S+ + + D L + + + R Sbjct: 651 NADLSKIRGARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNAL 710 Query: 700 LTSVDTDAQSGGQAVKLVIDRIAARRLGLEMTNID---------DFLNNAFSQRQVATQY 750 L +V T +++ ID A L + ++I+ ++N+ S +V Y Sbjct: 711 LANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVY 770 Query: 751 QALNQYYTILGLAPQYTQDPEVLKQLFVLNSAGNAVPLSAFARLQSASAPLAVAHQNQSA 810 + + + + L + +V N+A VP +AF Q P + N + Sbjct: 771 VQGDSAFRM---------QADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVS 821 Query: 811 TTTIAFNLADGVSLQQAKAAIDAAVISLGLPGSIHGGMQGTAQAFVAMASAMPWLILAAL 870 + I A GVS A A ++ V LP I G++ + P L ++ Sbjct: 822 SFEIVGEPAAGVSSGTAMAEVEKLVAQ--LPAGIGFEWTGSSYQERLSGNQAPMLYAISI 879 Query: 871 LAVYIVLGMLYESWIHPITILSTLPSAGVGALLLLLATHTQFTVIALIGVLLLIGIVKKN 930 L V++ L LYESW P ++ +P +G +LL V +G+L +G+ KN Sbjct: 880 LFVFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKN 939 Query: 931 AILMVDFA--LHVERQHDWAAERAILEACRMRLRPILMTTMAAFFGALPMVLQTGGDAAL 988 AIL+V+FA LH + W A LEA ++RLRPILMT++A FG LP+ + +G +A Sbjct: 940 AILIVEFAKQLHESGKSLW---EATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSAS 996 Query: 989 RRPLGLTICGGLALSQLLTLYTTPVVY----VYMDRMGSAAKRLWRRRRPR 1035 RR +G + GG+ + LL ++ P+ Y ++DR + R+PR Sbjct: 997 RRAIGTGVLGGMLSATLLGIFFVPLFYYLIGAWLDRRAA--------RKPR 1039 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust. Identities = 310/1049 (29%), Positives = 537/1049 (51%), Gaps = 34/1049 (3%) Query: 3 LSRPFILRPVATLLLSLALTLLGALAYRMLPVAPLPQVDFPTIMVTASLAGASPETMAAT 62 + R FI RP+ +++L + L G +A LP+A P V PT+ + A+ GA+P+TM Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 63 IAAPLERAMGQIAGITEMTSSS-SQGSTNVIVQFDLERDIDGAARDVQAAINAARSLLPS 121 + + +ER + + + SS+ + G+ + V F D + A DVQ + A + LP Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 122 SLKTLPTYRKANPADAPILLLALTS--KTVDKGKLYDLASSKLQQTIAQVQGVGQVSLMG 179 +++ + + A + +L+++LTS D+ +L D + + + + +++GVG+V L G Sbjct: 121 TVRQNGVTVE-SAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFG 179 Query: 180 SALPAVRIELQPQQLSHYGISLDTVRQVVANATTNLPKGEL------QGEGLHWWVDANG 233 A A+RI L P +L+ YG+++ + ++ + G L +G+ + + G Sbjct: 180 -AEQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQG 238 Query: 234 QLTKASDYTNLVVSYQ-NGAAVKLSDVARVYDSVQDQYVAGYFNDSPSVMMGITRSSGAN 292 QL + + +V+ + +G+ V L DVARV Q A N P+ + + S GAN Sbjct: 239 QLQSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGAN 298 Query: 293 MLATIDAIKAQLPIMQKMLPKEVQLSLAMDRSPSIRGSLRETELTLLISTLLVIAVVFLF 352 + T AI+A++ ++ LP+ + SL + +P ++ S+++ TL+ + +LV V++LF Sbjct: 299 AVRTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLF 358 Query: 353 LRNARAVLIPAVALPISLIGTCAAMYLLGYSLDTLSLMALIIATGFVVDDAIVVLENISR 412 L+N R +IPA+ PI+L+GT A M L GYS++ L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVER 418 Query: 413 HL-EEGAPPLKAALDGSKEVGFTVLSMTASLIAVFLPILLMGSIVGRLFREFAVTLSVSL 471 + EG P +A + E+ ++ +T L AVF+P+ L G VG ++R+F+V ++VS+ Sbjct: 419 IMAHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSI 478 Query: 472 VLSMIVSLTLTPMLCSRLLR---AHKHDASGAPVQPNVFYRAIERVLNAVSDGYASSL-E 527 + S ++L+LTP LC+ LLR A HD G F+ A R N ++ Y S+L Sbjct: 479 LFSAFLALSLTPALCATLLRPVPAGHHDKRG-------FFGAFNRAFNRLTARYESALGR 531 Query: 528 WVMRHKRLTLLSLVLTVALNLFLFTAVQKGFFPDQDTGMLMGQMRADQAASFQSVHPQLL 587 + R R+ L+ L+ L + A+ F P++D G M + A+ + + Sbjct: 532 LIARGLRMMLVYAALS-GLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVD 590 Query: 588 AFSRLIQSDPDVASVMASTGGGAFGSR-NTANFFVSLKDSSQRKSTAT--EIANRLTRKA 644 F R ++ D+ + ++ G G GS N A F LKD +RK + + E Sbjct: 591 QFERYLKGREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAME 650 Query: 645 SGVPGASLFLMAGQDLRMGGRSANATYQYSLQSDSLDTLREWSPKVYAVLRKLPELTSVD 704 SGV G + L+ +G S A + L+ ++ A+ K +L+ V Sbjct: 651 SGVDGMVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVY 710 Query: 705 TDAQSGGQAVKLVIDRIAARRLGLEMTNIDDFLNNAFSQRQVATQYQALNQYYTILGLAP 764 +D G +V+L IDR A LG+ ++I D L+ A V A IL Sbjct: 711 SDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQA 770 Query: 765 QYTQDPEVLKQLFVLNSAGNAVPLSAFARLQSASAPLAVAHQNQSATTTIAFNLADGVSL 824 E + +L+V N +G VPL+ + AP + I+ + A GV+ Sbjct: 771 SARMQLEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVAS 830 Query: 825 QQAKAAIDAAVISLGLPGSIHGGMQGTAQAFVAMASAMPWLILAALLAVYIVLGMLYESW 884 +A A ++ ++ LP G + A+ P L+ ++L V++VL LYESW Sbjct: 831 GEAMAEMER--LAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESW 888 Query: 885 IHPITILSTLPSAGVGALLLLLATHTQFTVIALIGVLLLIGIVKKNAILMVDFALHVERQ 944 P++++ +P VGA+ ++ V +G++ +IG+ KNAIL+V+FA + + Sbjct: 889 SIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSE 948 Query: 945 HDWAAERAILEACRMRLRPILMTTMAAFFGALPMVLQTGGDAALRRPLGLTICGGLALSQ 1004 E AI +A +RLRPILMT++A G +P++L +G A +R +G + GG+ + Sbjct: 949 GMGLVEAAI-KASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSAT 1007 Query: 1005 LLTLYTTPVVYVYMDRMGSAAKRLWRRRR 1033 +L + PV +V + +G A+RL R+ R Sbjct: 1008 VLAVLFVPVFFVLV--LG-CAQRLARKGR 1033 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,664,097 Number of extensions: 100240 Number of successful extensions: 605 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 527 Number of HSP's successfully gapped: 12 Length of query: 1043 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 948 Effective length of database: 1,170,045 Effective search space: 1109202660 Effective search space used: 1109202660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)