BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2679.p (1140 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 2132 0.0 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 190 5e-49 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 185 2e-47 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 175 2e-44 gi|300310697|ref|YP_003774789.1| two component hybrid sensor his... 170 5e-43 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 2132 bits (5525), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1069/1145 (93%), Positives = 1099/1145 (95%), Gaps = 5/1145 (0%) Query: 1 VTPPATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEA 60 +T PATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEA Sbjct: 1 MTHPATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEA 60 Query: 61 ISGAITLSYGFTNAFWAIVCVVVLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTIT 120 ISGAITLSYGFTNAFWAI CVV+LFFLTGLPI YYAARYGVDMDLLTRGAGFGYIGSTIT Sbjct: 61 ISGAITLSYGFTNAFWAIACVVLLFFLTGLPICYYAARYGVDMDLLTRGAGFGYIGSTIT 120 Query: 121 SLIYASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWT 180 SLIYASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCS+IIIPMVAYGITLINRLQMWT Sbjct: 121 SLIYASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSIIIIPMVAYGITLINRLQMWT 180 Query: 181 QPLWLVLLVLPYVCVLYKEPEALSNLLSFAGRAEEGSSFNLTLFGAAATVAFSLIAQVGE 240 QPLWLVLLVLPYVCVLYKEP+ALSNL+SFAGRAEEGSSFNLTLFGAAATVAFSLIAQVGE Sbjct: 181 QPLWLVLLVLPYVCVLYKEPDALSNLMSFAGRAEEGSSFNLTLFGAAATVAFSLIAQVGE 240 Query: 241 QVDFLRFLPQKTSANRGRWWGALLLAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARAVE 300 QVDFLRFLPQKT ANRGRWW ALLLAGPGWILLGGAKMLGG LLAFLAIQHEVPMARAVE Sbjct: 241 QVDFLRFLPQKTPANRGRWWSALLLAGPGWILLGGAKMLGGALLAFLAIQHEVPMARAVE 300 Query: 301 PTQMYLIGYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR 360 PTQMYL+GYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR Sbjct: 301 PTQMYLVGYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR 360 Query: 361 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHIEF 420 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHIEF Sbjct: 361 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHIEF 420 Query: 421 KRAHLYDVNPVGVGSMTIATLLSTLAMSGVLGKTVAAMAPFIALGTALVSAPLIAVATGS 480 KRAHLYDVNPVGVG+M IATLLSTLAMSGVLGKTVAAMAPFIALGTAL SAPLIA+ATGS Sbjct: 421 KRAHLYDVNPVGVGAMAIATLLSTLAMSGVLGKTVAAMAPFIALGTALASAPLIALATGS 480 Query: 481 RYYIARRDTLSEQSYRPYTPGQAHSVLDCVICGNAFETPDMAHCPAYQGAICSLCCSLDA 540 RYYIARRDTL+EQ+YRP TPGQA VL C ICGNAFETPDMAHCPAYQGAICSLCCSLDA Sbjct: 481 RYYIARRDTLAEQNYRPVTPGQAQPVLACAICGNAFETPDMAHCPAYQGAICSLCCSLDA 540 Query: 541 RCKDRCKTPRARLPNQILHTLRQLIPARFTLKLNTRIGHYLAVFGLLAGGLAIVLWMLYF 600 RCKDRCKTPRARLPNQILHTLRQLIPARF +KLNTRIGHYL+VFGLLAGGLA+VLWMLYF Sbjct: 541 RCKDRCKTPRARLPNQILHTLRQLIPARFAVKLNTRIGHYLSVFGLLAGGLAVVLWMLYF 600 Query: 601 QQMADLSGLTLSAPDSLRGVFIKLFCLLLVVVGVGAWWLVLTNESRAVAQEESERQTNLL 660 QQMADLSG L AP SLR VFIKLFCLLLVVVGVGAWWLVLTNESRAVAQEESERQTNLL Sbjct: 601 QQMADLSGSGLDAPASLRSVFIKLFCLLLVVVGVGAWWLVLTNESRAVAQEESERQTNLL 660 Query: 661 LQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP 720 LQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP Sbjct: 661 LQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP 720 Query: 721 PARKEAIAIIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAE 780 PARK+AI +IRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAE Sbjct: 721 PARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAE 780 Query: 781 QKGLQFRFEKTGRLPQIVHADQKRLRQILINLLGNAVKFTDRGGVTLKLRYAREIAYFDV 840 QKGL FRF+K+GRLPQIVHADQKRLRQILINLLGNAVKFTD GGVTL+LRYAREIAYFDV Sbjct: 781 QKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIAYFDV 840 Query: 841 IDTGIGIAEDDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQG 900 IDTGIGIA+DD ERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGEL VQSQVGQG Sbjct: 841 IDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQG 900 Query: 901 SSFHLKIYLPEVHVPRPRIPLEDQMSGYLGRSRHILVVDDQASQRRLLQDMLLPLGFTVS 960 SSFHLKIYLPEVHVPRPRI LEDQMSGY G SRHILVVDDQASQRRLL+DML+PLGFTVS Sbjct: 901 SSFHLKIYLPEVHVPRPRIKLEDQMSGYAGPSRHILVVDDQASQRRLLKDMLMPLGFTVS 960 Query: 961 QADSGLACMERLAHEVPDLVLLDIAMPQMDGWTVARAIRARGLTQLPILLVSANAFENLH 1020 +ADSGLACME L H +PDLVLLDIAMPQMDGW+VARAIRARGL QLPILLVSANAFENLH Sbjct: 961 EADSGLACMETLGHALPDLVLLDIAMPQMDGWSVARAIRARGLAQLPILLVSANAFENLH 1020 Query: 1021 ERNEPPLVNDFVVKPVSYNELLGKIRQHLQLDWV-----ATPAAPAVVSQSLMLVPTQDK 1075 ERNEPPLVNDFVVKPVSY+ELLGKIRQHLQLDWV TPAAP Q+LMLVPTQ+K Sbjct: 1021 ERNEPPLVNDFVVKPVSYHELLGKIRQHLQLDWVAAADAPTPAAPPPAPQALMLVPTQEK 1080 Query: 1076 LAALLELGHIGYAKEILRQLDALESGNPAYLPFTTELRLLVKQFRLNEYVTRIKELIRHD 1135 LA LLELG IGYAKEI+RQLDALE +PAYLPFTTELR LV+QFRLNEYVTRIKELIRHD Sbjct: 1081 LATLLELGSIGYAKEIVRQLDALERQDPAYLPFTTELRQLVRQFRLNEYVTRIKELIRHD 1140 Query: 1136 LNDVR 1140 LNDVR Sbjct: 1141 LNDVR 1145 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 151/447 (33%), Positives = 228/447 (51%), Gaps = 61/447 (13%) Query: 654 ERQTNLL-LQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQI 712 E QT LL LQ+ + K +++A E E AN KS F+A MSHELRTPLNS L A++ Sbjct: 441 EEQTQLLELQKDDLAKTQVVLVEKATEL-ERANQYKSEFLANMSHELRTPLNSTLILAKL 499 Query: 713 L--HVDATIPPARKEAIAIIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQ 770 L + + + I +G LL+LI+ +LD++K+EAGK+ + + L ++ Sbjct: 500 LADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADE 559 Query: 771 IVGMFAPQAEQKGLQFRFEKTGRLPQIVHADQKRLRQILINLLGNAVKFTDRGGVTLKL- 829 + FA A+QKGL F+ E +PQ + D +RL QIL NLL NA+KFT++G V+L++ Sbjct: 560 LSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRIY 619 Query: 830 -RYAREIAYFDVIDTGIGIAEDDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMG 888 IA F V DTGIGI ED + IF F ++ + R+ GTGLGL+ISR L H++G Sbjct: 620 PDAGGRIA-FAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLG 678 Query: 889 GELGVQSQVGQGSSFHLKI----------------------------------YLPEVHV 914 G++ V S++G+GS F L + P+V + Sbjct: 679 GDIRVTSRLGEGSIFTLSLPPLYSSEQAVSNTAPEPTPAAAAAASTLQAAHVATAPDVRI 738 Query: 915 PR----------PRIPLEDQMSGYLGRSRHILVVDDQASQRRLLQDMLLPLGF---TVSQ 961 R I ++D SR ILV++D A+ +L+D+ +GF Sbjct: 739 NRTPAAAAPQRLQEISIDDDRDRIETSSRLILVIEDDAAFAMILRDLAREMGFQCVVTHS 798 Query: 962 ADSGLACMERLAHEVPDLVLLDIAMPQMDGWTVARAIRARGLTQ-LPILLVSANAFENLH 1020 A+ G+A E P +L+D+ +P G V I+ T+ +P+ +VS + H Sbjct: 799 ANEGVAAAEMYR---PSAILMDMNLPDFSGLGVLDQIKRNPKTRHIPVHVVSVADYS--H 853 Query: 1021 ERNEPPLVNDFVVKPVSYNELLGKIRQ 1047 E E + + +KPV EL+G IR+ Sbjct: 854 EAMERGAIG-YALKPVQREELIGAIRK 879 Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 7/121 (5%) Query: 933 RHILVVDDQASQRRLLQDMLLPLGFTVSQADSGLACMERL--AHEVPD----LVLLDIAM 986 R ILVV+D L +L P G V A +G ++ L + + PD LVL+DI M Sbjct: 1035 RRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLMDIMM 1094 Query: 987 PQMDGWTVARAIRARGL-TQLPILLVSANAFENLHERNEPPLVNDFVVKPVSYNELLGKI 1045 P+MDG T R IR + + +LPI+ ++A A ++ E+ ND++ KP+ +LL + Sbjct: 1095 PEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1154 Query: 1046 R 1046 R Sbjct: 1155 R 1155 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 137/439 (31%), Positives = 221/439 (50%), Gaps = 58/439 (13%) Query: 668 KQTDAEL-QRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEA 726 ++ DA L R KE A+ AN AKS F+A +SHE+RTP+N ILG +++L R A Sbjct: 327 REEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDYA 386 Query: 727 IAIIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQF 786 +I +G L+ +I+ +LD +KIE+GK+ L ++++ ++ P ++K +QF Sbjct: 387 DSIHGATG-GLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQF 445 Query: 787 RFEKTGRLPQIVHADQKRLRQILINLLGNAVKFTDRGGVTLKLRYAREIA-------YFD 839 V D RL+Q+L NLL NA+KFT G V L + ++ + +F Sbjct: 446 DLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFA 505 Query: 840 VIDTGIGIAEDDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQ 899 + DTGIGI+ + L+++F PF ++ ++ R GTGLGLAIS+ LV +MGG + QS G+ Sbjct: 506 ITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGE 565 Query: 900 GSSFHLKIYLPEVHVPRPR-------------------------------IPLEDQ---- 924 + F +I PE P P +P ++ Sbjct: 566 STRFSFEILCPEASTPAPEPVSEAAAPAPATALATTAPALPPAAEAPGTLMPPDNAPQPP 625 Query: 925 ---------MSGYLGRSRHILVVDDQASQRRLLQDMLLPLGFTVSQADSGLACMERLAHE 975 + L +R IL+ +D R+LL+ +L G + + ++GL +E + Sbjct: 626 SNVDASATVLPSLLAGAR-ILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTG 684 Query: 976 VPDLVLLDIAMPQMDGWTVARAIR----ARGLTQLPILLVSANAFENLHERNEPPLVNDF 1031 DLVL+D MP MDG+ IR ARGL + PI+ ++A+A E +R ++D+ Sbjct: 685 HYDLVLMDCMMPIMDGYQATAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDY 744 Query: 1032 VVKPVSYNELLGKIRQHLQ 1050 + KP + L+ + + LQ Sbjct: 745 LSKPFTQVGLMQTVEKWLQ 763 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 150/429 (34%), Positives = 222/429 (51%), Gaps = 43/429 (10%) Query: 677 AKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP-PARKEAIAIIRRSGE 735 A+ AE AN AKS F+A +SHE+RTP+N +LG Q+L T P PA+++ + S + Sbjct: 886 ARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQ--RTQPLPAQQDYLDKAEISAK 943 Query: 736 HLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRLP 795 LL+L++ LLD +K++A +++L LE F + + A Q G+ +LP Sbjct: 944 SLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLP 1003 Query: 796 QIVHADQKRLRQILINLLGNAVKFTDRGGVTLKLRY-----AREIA-YFDVIDTGIGIAE 849 + + D RL+Q+L+NL GNA+KFT +G + + R +A +V DTGIGIA Sbjct: 1004 RRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGIAA 1063 Query: 850 DDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSF--HLKI 907 D L+ IF F ++ A+ R GTGLGLAIS+ LV +MGG+L V S+ G+GS F L++ Sbjct: 1064 DRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDLQL 1123 Query: 908 YLPEVHVPRPRI------PLEDQMSGYLGRSR-----------------HILVVDDQASQ 944 + + V P P Q + + SR IL+V+D Sbjct: 1124 AVDDDSVLGPAAADDAARPQPLQAASHTAGSRAPETARSAPDAQCLQGVQILLVEDNPVN 1183 Query: 945 RRLLQDMLLPLGFTVSQADSG-----LACMERLAHEVPDLVLLDIAMPQMDGWTVARAIR 999 R++ ++L G V+ ADSG +AC + H DLVL+D+ MP MDG R IR Sbjct: 1184 RQVASELLALSGAQVTCADSGSMGVAMAC-DPARHF--DLVLMDLQMPGMDGIEATRRIR 1240 Query: 1000 AR-GLTQLPILLVSANAFENLHERNEPPLVNDFVVKPVSYNELLGKIRQHLQLDWVATPA 1058 + L LPIL ++ANA +R + + KP+ L+ + HL + A Sbjct: 1241 GQYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPIDIATLIPVLLAHLHHERPVPEA 1300 Query: 1059 APAVVSQSL 1067 AP V Q L Sbjct: 1301 APQAVPQDL 1309 >gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 916 Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 140/402 (34%), Positives = 208/402 (51%), Gaps = 37/402 (9%) Query: 673 ELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRR 732 EL++A +AA+ ANLAKS F+ +SH+LRTPL SILG+A ++ II R Sbjct: 436 ELRQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASGGPHAGHGR---IIMR 492 Query: 733 SGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTG 792 S H+L++++ L+D A+ + + L L A L++I A+++ F + + Sbjct: 493 SARHMLTMVNDLIDYARGDPLDTPQPT-PLYLHALLQEIAQEGQVLAQRQHNHFTLDISP 551 Query: 793 RLPQIVHADQKRLRQILINLLGNAVKFTDRGGVTLKLRYAREIA-------YFDVIDTGI 845 LP ++ D +RL +IL NLL NA K+T G + L +++ + A +V DTG Sbjct: 552 DLPPVLALDARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGC 611 Query: 846 GIAEDDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSFHL 905 GIA RIF PFER+ A R G G+GLAI R+ V MGG + ++SQ G G+ HL Sbjct: 612 GIAPQFQSRIFEPFERADAD--RRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHL 669 Query: 906 KIYLPEVHVPRPRIPLEDQMSGYL-----------GRSRHILVVDDQASQRRLLQDMLLP 954 ++ P R +D S ++ G R ++VV+D RLL D L Sbjct: 670 QL-------PAERGSEQDIASHHVQEHSSTRVLIDGAGRQVVVVEDSPEIARLLSDQLSS 722 Query: 955 LGFTVSQADSGLACMERLA-----HEVPDLVLLDIAMPQMDGWTVARAIRARGLTQLPIL 1009 LGF VS G + L+ E P LVL D +P + G V +A R R L ++P+L Sbjct: 723 LGFAVSVFGDGETAIAHLSALTMDQEAPALVLTDYLLPGVHGGAVLQAAR-RLLPEVPVL 781 Query: 1010 LVSANAFENLHERNEPPLVNDFVVKPVSYNELLGKIRQHLQL 1051 L+SA E + + ++KPV+++EL I Q LQL Sbjct: 782 LLSATLHACEVELDGDLRFDGSLLKPVNFSELQEMIAQLLQL 823 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,368,277 Number of extensions: 142045 Number of successful extensions: 861 Number of sequences better than 1.0e-08: 52 Number of HSP's gapped: 807 Number of HSP's successfully gapped: 55 Length of query: 1140 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1044 Effective length of database: 1,165,310 Effective search space: 1216583640 Effective search space used: 1216583640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 136 (57.0 bits)