BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2675.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t... 518 e-148 gi|300313998|ref|YP_003778090.1| urea transport system, ATPase c... 266 9e-73 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 167 6e-43 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 160 7e-41 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 152 2e-38 >gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 518 bits (1333), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/255 (99%), Positives = 254/255 (99%) Query: 1 MSENPIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDL 60 MSEN IGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDL Sbjct: 1 MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDL 60 Query: 61 ICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRK 120 ICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRK Sbjct: 61 ICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRK 120 Query: 121 VFGALTFKRSPDVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLML 180 VFGALTFKRSPDVVARVEAVAA+IFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLML Sbjct: 121 VFGALTFKRSPDVVARVEAVAAEIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLML 180 Query: 181 DEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME 240 DEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME Sbjct: 181 DEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME 240 Query: 241 KVQSDPKVIDVYLGH 255 KVQSDPKVIDVYLGH Sbjct: 241 KVQSDPKVIDVYLGH 255 >gi|300313998|ref|YP_003778090.1| urea transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 266 bits (681), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 134/253 (52%), Positives = 183/253 (72%), Gaps = 3/253 (1%) Query: 5 PIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGK 64 P G ++ +L +E++TVSFDGFKA++ LNL + E+R +IGPNGAGKTT++D+I GK Sbjct: 36 PEGVDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGK 95 Query: 65 TRATSGSIKFNNH-ELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFG 123 TR TSG+ F +LTKM+E+ I G+GRKFQ P+++E +VFENLE++ ++V Sbjct: 96 TRPTSGTAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKT 155 Query: 124 ALTFKRSPDVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEP 183 L + S + + ++E + I L Q A LLSHGQKQWLEIGMLLMQEP+LL+LDEP Sbjct: 156 TLFARLSSEQIGKIEEILKLIRLNGQEQRVAGLLSHGQKQWLEIGMLLMQEPQLLLLDEP 215 Query: 184 VAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAH--KVTVLHQGKILAEGSMEK 241 VAGMS +E +TAELL + S++V+EHDM FV+ IA KVTVLH+G +LAEG+M + Sbjct: 216 VAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMRQ 275 Query: 242 VQSDPKVIDVYLG 254 VQS+ +VI+VYLG Sbjct: 276 VQSNERVIEVYLG 288 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 167 bits (424), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 145/244 (59%), Gaps = 6/244 (2%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 +L +LT F GF AV +NL ++R + +IGPNGAGKTT +L+ TSG I F Sbjct: 5 ILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILF 64 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGALTFKRSPDVV 134 N ++T + I R G+ R FQ +++ ++SV EN+ + R K+ + F ++ + + Sbjct: 65 NGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQR--KLGTSFHFWKNGESL 122 Query: 135 ARVEAVAADIFLEEQL----HTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGMSVS 190 +++ A + E L HT L +G+K+ LEI L EPEL++LDEP GM Sbjct: 123 KQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 Query: 191 EREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSDPKVID 250 + ++ L+ ++S GR+++++EH+M + I +++VL +G +LAEGS E+V +P+V++ Sbjct: 183 DVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVME 242 Query: 251 VYLG 254 Y+G Sbjct: 243 AYMG 246 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 160 bits (406), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 155/248 (62%), Gaps = 8/248 (3%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 +L + D++ +F G + + +N V++ E+ +IGPNGAGKTTV +LI G RA+SGSI+F Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENL------EMSFPRGRKVFGALTFK 128 N+ ++ ++ H I G+ R FQ +++ +++ EN+ +++ + F+ Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 129 RS-PDVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGM 187 + + R + + + L+ + H AD LS+G+++ LE L +P+LL+LDEPVAGM Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 188 SVSER-EKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSDP 246 + +E+ E +E++ +G ++ +IEHDM FV + ++ VL+ GKI+AEG+ ++++++ Sbjct: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 Query: 247 KVIDVYLG 254 +VI+ YLG Sbjct: 242 EVIEAYLG 249 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 152 bits (384), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 142/247 (57%), Gaps = 5/247 (2%) Query: 12 AHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGS 71 + P+L ++T + F AV+ + L ++ V VIGPNGAGKTT+ + G T T GS Sbjct: 2 SRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGS 61 Query: 72 IKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGALT-FKRS 130 I E+ + + V+ G+ R FQ S++ NLSV ENL ++ +GR AL +KR+ Sbjct: 62 ILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLA-AQGRAPLAALNPWKRA 120 Query: 131 PD---VVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGM 187 A + + A + L+ LSHGQ++ LE+GM + P+++ LDEP +GM Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 188 SVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSDPK 247 + + + +L+ + + +VV+IEH+MD V I+ ++TV+ G+ILA+G +++SD + Sbjct: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 Query: 248 VIDVYLG 254 V YLG Sbjct: 241 VRRAYLG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 662,930 Number of extensions: 22934 Number of successful extensions: 371 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 126 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)