BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2668.p (819 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311937|ref|YP_003776029.1| poly(3-hydroxyalkanoate) synthe... 1382 0.0 gi|300309607|ref|YP_003773699.1| poly(3-hydroxyalkanoate)synthet... 69 1e-12 >gi|300311937|ref|YP_003776029.1| poly(3-hydroxyalkanoate) synthetase [Herbaspirillum seropedicae SmR1] Length = 832 Score = 1382 bits (3578), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/821 (85%), Positives = 744/821 (90%), Gaps = 7/821 (0%) Query: 1 MVSRNKSASITHDAAGIEAGN---TATPSAWGDVPAYVEDCVQRSFLFLDTLLDRGNDYL 57 M++R K S + + A ++WGDVPAY++DC+QRSFLFLDTLLDRGNDYL Sbjct: 1 MINRKKPVSAAPNDGHAHPDDDQPVAASASWGDVPAYLQDCLQRSFLFLDTLLDRGNDYL 60 Query: 58 QHLEQGTPPLLKFDHELVLDGHDLPQPCNYALLRLQPPAGLAVDPQARPVVVVDPRAGHG 117 +HLEQGTPPLLKF HE+VLDGHDLPQ CNYALLRLQPPAGL V+PQARPVVVVDPRAGHG Sbjct: 61 EHLEQGTPPLLKFAHEVVLDGHDLPQACNYALLRLQPPAGLPVNPQARPVVVVDPRAGHG 120 Query: 118 PGIGGFKFDSEVGMAMKAGHTVYFVTFRPEPEDGQTLVTVMDAEARFLEEVIRRHPQCSA 177 PGIGGFKFDSEVGMAMKAGHTVYFVTFRPEPEDGQTLVTVMDAEARFLEEVIRRHPQCSA Sbjct: 121 PGIGGFKFDSEVGMAMKAGHTVYFVTFRPEPEDGQTLVTVMDAEARFLEEVIRRHPQCSA 180 Query: 178 KPVVIGNCQAGWAMMTLDAVRPELFGPLMMVGAPASYWAGSSTLNPMRYSGATLGGTWLA 237 KPVVIGNCQAGWAMMTLDAVRPELFGPLMMVGAPASYWAGSSTLNPMRYSGA LGGTWLA Sbjct: 181 KPVVIGNCQAGWAMMTLDAVRPELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLA 240 Query: 238 SLAADLGADRFDGAYLVENFEKLNPANTFWGKYYNLWAGVDQEAARFLEFERWWGGFFRM 297 SLAADLGADRFDGAYLVENFEKLNPANTFW KYYNLWAGVDQEAARFLEFERWWGGFFRM Sbjct: 241 SLAADLGADRFDGAYLVENFEKLNPANTFWNKYYNLWAGVDQEAARFLEFERWWGGFFRM 300 Query: 298 TGAEIEAITENLFVGNKLARGELEVKGRAVNLRDITAPIVVFASWGDNITPPPQALDWII 357 TGAEIEAITENLFVGNKLARGEL+V+G+ VNLR+I+APIVVFASWGDNITPPPQAL+WII Sbjct: 301 TGAEIEAITENLFVGNKLARGELQVRGKPVNLREISAPIVVFASWGDNITPPPQALNWII 360 Query: 358 DTWGDERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEM 417 DTWGDERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEM Sbjct: 361 DTWGDERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEM 420 Query: 418 KLERKDGRETQRWDALEPGDYTVHYEHRTMADLRQLNPEGREEESMFSTISQWSQINAQL 477 KLERKDGR TQRWD LEPGDYTVHYEHRTM DLR+LNPEGREEE++FSTISQWSQ+NAQ Sbjct: 421 KLERKDGRPTQRWDVLEPGDYTVHYEHRTMEDLRKLNPEGREEEAIFSTISQWSQMNAQF 480 Query: 478 YKTWVRPWVRMTATRDSANALMRLNPLRMQRQLFSDAHPAAAFIRQQAARARAQRVHLDP 537 YKTWVRPWVRMTATR+SANALMR+NPLRMQRQLFSDAHPAAAFIRQQAA+ARAQRV LDP Sbjct: 481 YKTWVRPWVRMTATRESANALMRMNPLRMQRQLFSDAHPAAAFIRQQAAQARAQRVQLDP 540 Query: 538 EHPLKLYERRMAQKITEELNAWRDQRDAGTVRVTRQLFGRNGLGAWLPPREPDAELAQRW 597 +HPLK YE RMAQKIT+ELNAWRDQRDA TVR+TRQ+FG NGLGAWLPPREPDAELAQRW Sbjct: 541 QHPLKQYEARMAQKITDELNAWRDQRDARTVRMTRQMFGPNGLGAWLPPREPDAELAQRW 600 Query: 598 AQQELGRYRATVIDQIAEGGFAEAVCRIVIAGMLSIGAFERRSLRLARLLAQLPNMHASV 657 AQQELGRYR TVI QIAEGGFAEAVCRIVIAGM+SIG FERRSLRLARLLAQLPNMHASV Sbjct: 601 AQQELGRYRETVIGQIAEGGFAEAVCRIVIAGMISIGVFERRSLRLARLLAQLPNMHASV 660 Query: 658 SAKTNWVQLLKEQARITAVAPVEALNALGQMLPDRASRERALALAAAVMMIEPTLANPRS 717 SA+TNWVQLLKEQARITAVAPVEALNALGQMLPD ASRERALAL+AAVMMIEPTLANPRS Sbjct: 661 SAQTNWVQLLKEQARITAVAPVEALNALGQMLPDAASRERALALSAAVMMIEPTLANPRS 720 Query: 718 EIIELLIGTLDVEPDKVIALARKLTTAIGEDSDELRLP--QAESAPAVAPRKAARKPVAR 775 EIIELLIGTLDV PDKVIALARKLT+AIG SDE+ +P + E+AP PR ++ + Sbjct: 721 EIIELLIGTLDVNPDKVIALARKLTSAIGAGSDEVTVPAGELEAAPVKRPRASSPRRTEA 780 Query: 776 KPVAPVKTTTTTKTATKATAKTKVSSKPAPKKATTPAKPRT 816 KP AP T K A A +K + K+ PAKP + Sbjct: 781 KP-APTPARTQRKAAAPAQ-PSKAAKSVTSAKSLKPAKPSS 819 >gi|300309607|ref|YP_003773699.1| poly(3-hydroxyalkanoate)synthetase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 123/299 (41%), Gaps = 43/299 (14%) Query: 106 PVVVVDPRAGHGPGIGGF-KFDSEVGMAMKAG-HTVYFVTFRPEPEDGQTLVTVMDAEAR 163 P ++V P AGH I + + S V + G V + + D + L Sbjct: 87 PTLIVAPYAGHTSVIADYDQGQSLVETLLGNGVDHVLLIDWHSASADMKDLEI-----DN 141 Query: 164 FLEEVIRRHPQCSAKPVVIGNCQAGWAMMTLDAVRPELFGPLMMVGAPASYWAGSSTLN- 222 +L ++ + + ++G CQ GW + A PE L++ G+P AG L Sbjct: 142 YLADLCVVIDELGGRVRLVGLCQGGWISAMIAARFPEKVARLVLAGSPIDAGAGEGPLKQ 201 Query: 223 -----PMRYSGATLGGTWLASLAADL---GADRFDGAYLVENFEKLNPANTFWGKYYNLW 274 P+R+ DL G G+++++ ++ ++P ++ ++ L Sbjct: 202 MVQRLPLRFY-------------EDLVRSGGGLMRGSFMLQGWKNMHPDEHYFNEHLELL 248 Query: 275 AGVDQEA--ARFLEFERWWGGFFRMTGAEIEAITENLFVGNKLARGELEVKGRAVNLRDI 332 +D A A+ F W+ + G ++F N LARG+ G+ ++LR I Sbjct: 249 QHIDDPAYLAKRETFAAWYETTVDLPGRWYLQAIGHIFKDNLLARGKYVALGQQLDLRQI 308 Query: 333 TAPIVVFASWGDNITPPPQALDWIIDTWGDERAIAAAGRTIIYVLHESV--GHLGIFVG 389 T P+ + A D+IT P Q L+ A A G + + V GH+G+F+G Sbjct: 309 TCPLYLLAGERDDITTPEQVLN----------AAALVGTPAAQITQKIVPGGHIGLFMG 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,502,681 Number of extensions: 111744 Number of successful extensions: 297 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 2 Length of query: 819 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 726 Effective length of database: 1,179,515 Effective search space: 856327890 Effective search space used: 856327890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)