BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2663.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311936|ref|YP_003776028.1| phosphonoacetaldehyde phosphono...   444   e-126

>gi|300311936|ref|YP_003776028.1| phosphonoacetaldehyde
           phosphonohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  444 bits (1143), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/265 (81%), Positives = 239/265 (90%)

Query: 11  LQAVIFDWAGTLVDFGSLAPTQIFVDAFKSFDIDITLAQARGPMGLSKWQHIRVLLDDAT 70
           LQAVIFDWAGTLVDFGSLAPTQIFVDAF+SFDI+I+LAQARGPMGLSKWQHIR+LLD+  
Sbjct: 13  LQAVIFDWAGTLVDFGSLAPTQIFVDAFESFDIEISLAQARGPMGLSKWQHIRLLLDEPA 72

Query: 71  IAAQWQAHSGRAPSDADVDAIYARFMPMQIAKVGQYSQPIEGAAQVLAWLRAEGLKIGSC 130
           IAAQWQA +GR P+D+DVDA+Y RFMPMQIAKVGQYSQPI+GAAQVLAWLR +GLKIGSC
Sbjct: 73  IAAQWQARTGRPPADSDVDALYERFMPMQIAKVGQYSQPIDGAAQVLAWLRGQGLKIGSC 132

Query: 131 SGYPRQVLEVLRPMAAVDGIAPDHVVAGDELSAGGRPGPYMALANVLALKIDDVAACIKV 190
           SGYPRQVL+VL P+AA  GI PDHVVAGDEL+AGGRPGPYMALANVLAL+IDDVAACIKV
Sbjct: 133 SGYPRQVLDVLLPLAAAAGIRPDHVVAGDELAAGGRPGPYMALANVLALRIDDVAACIKV 192

Query: 191 DDTVPGIEEGIRAGMWSVGVSLSGNEVGLTREELAQLPHEEVTRLKQQAELRLRAAGAHY 250
           DDTVPGIEEG+RAGMWSVGVSL GNEVGLTR EL  LP    + L +QA+ RLR AGAHY
Sbjct: 193 DDTVPGIEEGLRAGMWSVGVSLCGNEVGLTRSELDSLPPATASELNRQAQDRLRQAGAHY 252

Query: 251 VIDSVAELPQVVAQVRARLASGARP 275
           VID+VA LP+VVA +RARLA G RP
Sbjct: 253 VIDTVAGLPEVVAHIRARLARGERP 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 932,769
Number of extensions: 41497
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)