BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2662.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...    84   2e-17
gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...    82   7e-17

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 16/270 (5%)

Query: 27  RRALLLTFPDAAALGLEDSV-AELLGAQLAGIDNTVQPNPDVAWLADMYQRLWQQHADVP 85
           ++ L++T       GL D V  +L     A + +   PNP+   +      L++QH    
Sbjct: 30  KKPLVVTDMGIRNAGLLDKVLGQLKEGVGAVVYDQTPPNPNEGAVRAAVA-LFRQHG-CD 87

Query: 86  CLIALGGGSVIDCAKAMLA----PTPSGRFDEVLAHLREESAFQPEPTRLKSLIAIPTTA 141
            ++A+GGGS ID AK +        P   F  +   L   +A      +   +IAIPTTA
Sbjct: 88  GIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANITA------KTAPVIAIPTTA 141

Query: 142 GTGSEVTPWATLWDASGGRKYSLHRPWTWAQAAIIDARLMLSLPAATTLASGLDALSHAL 201
           GTGSEV   A L     GRK  +  P+   + AI D  L L LP   T A+G+DA++H L
Sbjct: 142 GTGSEVGRGAILI-LDDGRKVGIISPYLVPKLAICDPELTLGLPPLMTAATGMDAIAHCL 200

Query: 202 EAIWNVHRNPVSSTLAVAAARTILVTLPALMRQPRDLALREQMALAALQAGLAFSNTKTA 261
           E       NP +  +A+         +    R+P D   R  M  A++Q  +AF      
Sbjct: 201 ETFMAPSFNPPADGIALDGLWRAWAHIERATREPGDREARLNMMSASMQGAMAFQK-GLG 259

Query: 262 LAHSLSYDI-TLRQGVAHGIACSFSLPHIL 290
             HSLS+ +  +   + HG   +  LP I+
Sbjct: 260 CVHSLSHSLGGINPRLHHGTLNAIFLPAII 289


>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 123/281 (43%), Gaps = 38/281 (13%)

Query: 13  GAGSLAQLPR---LLAGRRALLLTFPDAAALGLEDSVAELLGAQLAGI-DNTVQPNP-DV 67
           G GSL  L R   LL  +RAL+L  P   A    + VA L+GA+ AGI D  V   P + 
Sbjct: 16  GHGSLQHLVRETELLGAQRALVLCTPGQRAEA--ERVAALIGARCAGIFDQAVMHVPIET 73

Query: 68  AWLADMYQRLWQQHADVPCLIALGGGSVIDCAKAMLAPTPSGRFDEVLAHLREESAFQPE 127
           A  A    R     AD  C IA+GGGS +   KA+                    A + E
Sbjct: 74  ARHAREVARALG--AD--CAIAIGGGSTMGLGKAI--------------------ALESE 109

Query: 128 PTRLKSLIAIPTTAGTGSEVTPWATLWDASGGRKYSLHRPWTWAQAAIIDARLMLSLPAA 187
                 ++AIPTT   GSE+TP   L +A  GRK +        +  I D  L L LP  
Sbjct: 110 ----LPILAIPTTY-AGSEMTPIYGLTEA--GRKKTGRDARVLPRTVIYDPALSLGLPLD 162

Query: 188 TTLASGLDALSHALEAIWNVHRNPVSSTLAVAAARTILVTLPALMRQPRDLALREQMALA 247
            ++ SG++A++HA E ++    NP+ S LA    R +   LP L  +  D+  R +    
Sbjct: 163 LSVTSGINAMAHAAEGLYAPDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYG 222

Query: 248 ALQAGLAFSNTKTALAHSLSYDITLRQGVAHGIACSFSLPH 288
           A   G    N   +L H L + +     + H    +  LPH
Sbjct: 223 AWLCGTVLGNVGMSLHHKLCHTLGGSYNLPHAQTHTVILPH 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,184,726
Number of extensions: 50345
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)