BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2657.p (508 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 697 0.0 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 230 2e-61 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 204 2e-53 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 202 4e-53 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 199 5e-52 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/488 (77%), Positives = 417/488 (85%) Query: 10 WRDMLGMASSNDKLRYVYEDRTMALVHIARVRDALYTNRDVMGRALMLANVPTAPGPDGA 69 WRDMLGMASSNDKL+YVYEDRTMAL+HIARVRDALY NRD+MGRALM+AN+ T P D + Sbjct: 41 WRDMLGMASSNDKLKYVYEDRTMALIHIARVRDALYQNRDLMGRALMMANLRTDPNADDS 100 Query: 70 SAHEQIQQWLGRLKGLDASFEQAWQAYRATRLSPEEQAQAERFEQSWKTYLQERNQVIEL 129 + +I+Q LG + LDASF + W+AYR TRLSPEE A RFE+ W+TYL ER+Q+I L Sbjct: 101 VSAARIKQNLGGMAALDASFREGWKAYRDTRLSPEETTLAGRFEERWQTYLSERDQIITL 160 Query: 130 IATTQLLQANQSWTQLTPRLASLATELGRLGQLQESLTHESYNAALEEYATLRRHNLQIA 189 IA + LQAN+ WT LT +LA LA L +LG+LQESLT +Y A EY LR HNL+IA Sbjct: 161 IANGEPLQANRRWTALTTQLADLAGLLSKLGRLQESLTGSAYEEARNEYQRLRTHNLEIA 220 Query: 190 GLALAVGFVIALWIICSLRRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDRGSLLYAMH 249 GL LA+G +ALWII +RR+LGGEP YAA IVRQIA+GNL V V LR DR SLLYAMH Sbjct: 221 GLTLALGLALALWIIAGVRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMH 280 Query: 250 TMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSAITNMSRAIQ 309 TMR RLTEIM VTLSTQAL SSRQLNATAH LA+ASSEQAAAVEEVH AI +M++AIQ Sbjct: 281 TMRARLTEIMRNVTLSTQALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQ 340 Query: 310 QTGEHARRTDQIAVAAAADADKSGAAVQTTVAAMRGIARQVGVIDDIAYQTNLLALNAAI 369 QTGEHARRT+QIAVAAA+DADKSGAAVQTTV AMRGIARQVGVIDDIAYQTNLLALNAAI Sbjct: 341 QTGEHARRTNQIAVAAASDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAI 400 Query: 370 EAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVEMAEQTSQRLVDGTLQGIR 429 EAARAGEHGRGFSVVAAE+RKLAERSQ SAHEISVIAQQSVE+AEQTSQRLV+GTLQGIR Sbjct: 401 EAARAGEHGRGFSVVAAEVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIR 460 Query: 430 QASQQINQITLSSRMQEEGVQEIGSAVAQLNDTTQRNAAASEELATTAEVVAERAHELSA 489 QASQQINQITLSSRMQEEGV EIG AV QLNDTTQRNAAASEELA TAE +AERA EL+A Sbjct: 461 QASQQINQITLSSRMQEEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNA 520 Query: 490 QLAYFRLQ 497 QLAYFRL+ Sbjct: 521 QLAYFRLE 528 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 230 bits (586), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 242/383 (63%), Gaps = 10/383 (2%) Query: 131 ATTQLLQANQSWTQLTPRLASLATELGRLGQLQESLTHESYNAALEEYATLRRHNLQIAG 190 A Q L +Q++ L +L S + RL + T + A ++YA L + + Sbjct: 185 AMAQELVFDQTYRTLFGKLMSPVNDFLRL---VDERTQANVRQAGKDYAELEQKIFWLLA 241 Query: 191 LALAVGFVIALWIICSL-RRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDRGSLLYAMH 249 ++ V F LW+ + R Q+GGEP A ++R++AEG+L V V L + D+ S+LY+ Sbjct: 242 ASVVVLFA-CLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQ 300 Query: 250 TMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSAITNMSRAIQ 309 M + T+++ V+ + +L +S Q+++++ L+ +++QAA VEE +++ ++ I Sbjct: 301 QMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIA 360 Query: 310 QTGEHARRTDQIAVAAAADADKSGAAVQTTVAAMRGIARQVGVIDDIAYQTNLLALNAAI 369 Q ++AR TD IA +A+ A + G AV+ TVAAM+ IA ++G+IDDIAYQTNLLALNAAI Sbjct: 361 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI 420 Query: 370 EAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVEMAEQTSQRLVDGTLQGIR 429 EAARAGEHG+GF+VVAAE+RKLAERSQ +A EI +A+ SV +AE+ L++ + IR Sbjct: 421 EAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGG-LLNQMVPSIR 479 Query: 430 QASQQINQITLSSRMQEEGVQEIGSAVAQLNDTTQRNAAASEELATTAEVVAERAHELSA 489 + + + +I +S Q G+++I +AV Q+ TTQ A+ASEEL+ T+E ++ +A L Sbjct: 480 KTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQD 539 Query: 490 QLAYFRL---QDDLPRA-KAQPV 508 + +F++ + + PRA KA P+ Sbjct: 540 LMRFFQVGEPRKNAPRASKAVPL 562 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/339 (39%), Positives = 207/339 (61%), Gaps = 10/339 (2%) Query: 168 HESYNAALEEYATLRRHNL---QIAGLALAVGFVIAL-----WIIC-SLRRQLGGEPDYA 218 H SYN AL + + L + + +AL G V+ + W++ +L RQ+GGEP Sbjct: 170 HRSYNVALGDASALTAREIIGQALETVALVAGGVLLILLGAGWLLTRTLLRQMGGEPGDV 229 Query: 219 AHIVRQIAEGNLGVSVRLRRRDRGSLLYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNA 278 +++++++G+L ++ L+ R S+++A+ M RL +++ V + L ++ +++A Sbjct: 230 VTVMQRLSDGDLVQTITLKPGCRDSMMHAIQKMMTRLAQVVGEVRGNADGLVSTAEEVSA 289 Query: 279 TAHDLAEASSEQAAAVEEVHSAITNMSRAIQQTGEHARRTDQIAVAAAADADKSGAAVQT 338 TA L+ AS+EQA VE+ A+ + +Q T ++AR TDQIA AAA +A + V+ Sbjct: 290 TAQSLSRASTEQANGVEQTSEALAQIHALLQSTAQNARLTDQIAAAAALEARQCAETVKQ 349 Query: 339 TVAAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGS 398 VAA++ IA ++ VIDDIAYQTNLLALNA IEAA AGEHG GF+VVAAE+R+LAERSQ + Sbjct: 350 MVAAIQQIAGKIAVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSA 409 Query: 399 AHEISVIAQQSVEMAEQTSQRLVDGTLQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQ 458 A EI +A+ +V +A ++L D + I + S + I SS Q V +I +A +Q Sbjct: 410 AQEIDEVARANVTLACAAERQLSD-MVPTITRTSVLVQDIVQSSEQQSTAVSQISTAASQ 468 Query: 459 LNDTTQRNAAASEELATTAEVVAERAHELSAQLAYFRLQ 497 L Q+N+ +SEELA T+E + RA L + +F+ Q Sbjct: 469 LAQVIQQNSLSSEELAVTSEELNRRALLLQTAVGFFQCQ 507 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 202 bits (515), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 219/372 (58%), Gaps = 15/372 (4%) Query: 144 QLTPRLASLATELGRLGQLQESLTHESYNAALEEYATLRRHNLQIAGLALAVGFVIALWI 203 ++ P A L LG+ ++ L +++ AA Y ++ + ++ + A I Sbjct: 152 KIRPVQAKWLDNLDELGRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAAAFLI 211 Query: 204 ICSLRRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDRGSLLYAMHTMRERLTEIMHAVT 263 + S+ QLGGEP A + QIA+GNL VS+ L + D+ SL+ ++ MR +LT I+ + Sbjct: 212 VRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIK 271 Query: 264 LSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSAITNMSRAIQQTGEHARRTDQIAV 323 S +++ ++ Q+ DL+ + EQAA++EE S++ ++ ++Q ++A + Q+A Sbjct: 272 HSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLAR 331 Query: 324 AAAADADKSGAAVQTTVAAMRGIARQ-------VGVIDDIAYQTNLLALNAAIEAARAGE 376 +A+ A K G V+ V M+ I++ + ++ IA+QTN+LALNAA+EAARAGE Sbjct: 332 SASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGE 391 Query: 377 HGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVEMAEQTSQRLVDG---TLQGIRQASQ 433 GRGF+VVA E+R LA+RS SA EI + + SV+ E Q+LVD T+ + ++ Q Sbjct: 392 QGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVE-AGQKLVDEAGLTMDEVVRSIQ 450 Query: 434 QIN----QITLSSRMQEEGVQEIGSAVAQLNDTTQRNAAASEELATTAEVVAERAHELSA 489 Q+N +IT +S Q G+ +I A++Q+++ TQ+NAA EE A+ A+ +A++A+ L Sbjct: 451 QVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSLRD 510 Query: 490 QLAYFRLQDDLP 501 +A FR++ P Sbjct: 511 AVAVFRIEQPQP 522 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 199 bits (506), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 15/367 (4%) Query: 144 QLTPRLASLATELGRLGQLQESLTHESYNAALEEYATLRRHNLQIAGLALAVGFVIALWI 203 Q P S EL L L++ L E+ A+ Y+ R L I+ + + + A W+ Sbjct: 155 QYLPVQKSWQVELKALAALEDQLNKEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWL 214 Query: 204 ICSLRRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDRGSLLYAMHTMRERLTEIMHAVT 263 L R+LGGEPDYA I QIAEG+L V + R D SL+ AM MR++L I+ V Sbjct: 215 TRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVR 274 Query: 264 LSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSAITNMSRAIQQTGEHARRTDQIAV 323 ++ + +S ++ DL+ + +QA A+EE S++ ++ ++Q E+A + + +A+ Sbjct: 275 KGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLAL 334 Query: 324 AAAADADKSGAAVQTTVAAMRGI-------ARQVGVIDDIAYQTNLLALNAAIEAARAGE 376 AA+ A + G+ V V M+ I A V VID IA+QTN+LALNAA+EAARAGE Sbjct: 335 AASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGE 394 Query: 377 HGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVEMAEQTSQRLVD-------GTLQGIR 429 GRGF+VVA+E+R LA+RS +A EI V+ SV E S +LV+ + IR Sbjct: 395 QGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS-KLVEQAGSTMHDIVTSIR 453 Query: 430 QASQQINQITLSSRMQEEGVQEIGSAVAQLNDTTQRNAAASEELATTAEVVAERAHELSA 489 + + + +I ++R Q G++++ A+ Q++D TQ+NAA E+ A A + E+A L Sbjct: 454 RVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQ 513 Query: 490 QLAYFRL 496 ++ FRL Sbjct: 514 LVSVFRL 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.126 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,295,567 Number of extensions: 47446 Number of successful extensions: 459 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 71 Length of query: 508 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 419 Effective length of database: 1,198,455 Effective search space: 502152645 Effective search space used: 502152645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)