BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2649.p
         (932 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311923|ref|YP_003776015.1| TonB-dependent outer membrane F...  1709   0.0  

>gi|300311923|ref|YP_003776015.1| TonB-dependent outer membrane Fe
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 931

 Score = 1709 bits (4426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/934 (89%), Positives = 879/934 (94%), Gaps = 5/934 (0%)

Query: 1   MSYRSQCHHYLRLSL--MSLAILSVLPMLARAADDVPATGAAQASDAPAAQDGSVKRLDS 58
           MSYRS   HY RLSL  MSLAILSVLP+LA+AAD+ P     +A+   A Q+GSVKRLDS
Sbjct: 1   MSYRSGSQHYRRLSLTLMSLAILSVLPLLAQAADETPV---GEATPGSATQEGSVKRLDS 57

Query: 59  VVVTRKRSQSSAAVAGKEVEDRVMDSVTREQVERLPDSTVTDVVKRVAGVSVSFNPDNVN 118
           VVVTRKRSQ+SAAVAGK+VEDRVMDSVTREQVERLPDSTVTDVV+RVAGVSV+FNPDNVN
Sbjct: 58  VVVTRKRSQTSAAVAGKQVEDRVMDSVTREQVERLPDSTVTDVVRRVAGVSVTFNPDNVN 117

Query: 119 GRDKAQFIAIRGLDGSYNNVTIDGAPMASVDQTTRSPRTNMLPASMVKEVQVFKTWTPDM 178
           GRDKAQFIAIRGLDGSYNNVTI+GAPMASVDQTTRS RTNMLPASMVKEVQVFKTWTPDM
Sbjct: 118 GRDKAQFIAIRGLDGSYNNVTINGAPMASVDQTTRSARTNMLPASMVKEVQVFKTWTPDM 177

Query: 179 DPNAVGGSVNIVGRSAFDNGGKPYFSATGAVGHAAGSGKVTSGADGLAKKSDVSFSNTFG 238
           DPNAVGGSVNIV RSAFDNGGKP FSATGAVGHAAG+GKV SGA+GLAKKSDV+FSNTFG
Sbjct: 178 DPNAVGGSVNIVSRSAFDNGGKPTFSATGAVGHAAGTGKVASGAEGLAKKSDVTFSNTFG 237

Query: 239 PDHRFGYVVSANFEKENTVSIGHMTTDNIFYNYYNPNGSIANPASSGGPNTGNGFPVPQQ 298
           PD RFGYV+SANFEKENTVSIGHMTTDNIFYNYYN NGSIANPASSGGPNTGNGFPVPQQ
Sbjct: 238 PDQRFGYVISANFEKENTVSIGHMTTDNIFYNYYNANGSIANPASSGGPNTGNGFPVPQQ 297

Query: 299 FKYWQHLKNTETSGFNAKLEGRFTPDLYGFVGFGYNNDSTHILRNETFIDDSRSTGNNPV 358
           FKYWQHLKN+ETSGFNAKLEGRFTPDL GFVGFGYN+DSTHILRNETFIDDSRSTGNNPV
Sbjct: 298 FKYWQHLKNSETSGFNAKLEGRFTPDLNGFVGFGYNSDSTHILRNETFIDDSRSTGNNPV 357

Query: 359 LNQTATSGQFARGEAEAGYAASTVKRTVSALQGGLDWKLDDNQVLSLRSSFSQAQHREPR 418
            NQT TSGQFA GEAEAGYAAST+KRT S LQGGLDWKLDD+QVLSLRSSFSQA+HREPR
Sbjct: 358 QNQTPTSGQFALGEAEAGYAASTIKRTTSVLQGGLDWKLDDSQVLSLRSSFSQAKHREPR 417

Query: 419 QLAKYIFANYTYPGAGSAPVLSGTNALGMSYNTAGFEPSVALNNPSNFTNLNNWQAYYWR 478
           +LAKYIFAN+ YPGAGSAPVLSGTNALGMSYNT+GFEPSVALNNPSNFTNLNNWQAYYWR
Sbjct: 418 ELAKYIFANFAYPGAGSAPVLSGTNALGMSYNTSGFEPSVALNNPSNFTNLNNWQAYYWR 477

Query: 479 KEMVKIDDQVGDVKLDYRWNMDQDARGLGAGVGVDYRRLEHSYDYVNNQYFPTSGGLNMV 538
           KEMVKIDDQVGDVKLDYRWNMDQDARGLGAGVGVDYRRLEHSYDYVNNQY+PTSGGL + 
Sbjct: 478 KEMVKIDDQVGDVKLDYRWNMDQDARGLGAGVGVDYRRLEHSYDYVNNQYYPTSGGLTLA 537

Query: 539 GNGFVSGTIMPYSGGLPFILVNGPQAWQQFAANQNQIAASSANSINSLQSNYSHSEQTAA 598
           GNG VS TIMPYSGGLPFILVNG QAWQQFAANQ QIAASS NS+NSLQSNYSHSEQTAA
Sbjct: 538 GNGSVSSTIMPYSGGLPFILVNGGQAWQQFAANQGQIAASSGNSVNSLQSNYSHSEQTAA 597

Query: 599 LYAMASYRTDGWSTLFGLRQDNTNLSTTGNVRSVTNGATSWVSQTKDSSYNYLLPAASLI 658
           LYAMASYRTD WS LFGLRQDNTN STTGNVR+V+NGAT+W SQTKDSSY YLLPAASLI
Sbjct: 598 LYAMASYRTDQWSGLFGLRQDNTNHSTTGNVRNVSNGATTWASQTKDSSYRYLLPAASLI 657

Query: 659 VNATDALKLKFAASQTIGRPNFDAYAPNTTISQNTDGSVSVTQGNPDIKPRESNNLDVSA 718
            +ATD +KLK AAS+TIGRPNFDAYAPNTTI+QNTDGSV+VTQGNPDIKPRES NLD SA
Sbjct: 658 FSATDDVKLKLAASKTIGRPNFDAYAPNTTINQNTDGSVTVTQGNPDIKPRESTNLDASA 717

Query: 719 EWYLPNSNLVSLALFNKKIKNEIYTLSSQGSLFYNGATRAASITQPVNASSSKINGVELS 778
           EWYLP S+L+S+ALFNKKIKNEIYTLSSQGSLFYNGATRAASI+QPVNASSS+INGVELS
Sbjct: 718 EWYLPRSSLLSVALFNKKIKNEIYTLSSQGSLFYNGATRAASISQPVNASSSRINGVELS 777

Query: 779 YVQNSLGWISPLLQGLGFSANISFLNGRLNAATSNGSTRTINNLVNQPDQIRNLTVFYNY 838
           YVQ SLGWISP LQGLGFSAN+SF +GRLNAA SNG TRTI NLVNQPDQIRNLTVFYNY
Sbjct: 778 YVQGSLGWISPALQGLGFSANLSFFDGRLNAAASNGGTRTIQNLVNQPDQIRNLTVFYNY 837

Query: 839 QKLDLSAAYNWTGRSLRLVDASLPSQDVYWQARKQIDLQARYDLGNGWRAFAEVANLTNS 898
           QKLD+SAAYNWTGRSLRLVD+SL S+DVYWQARKQIDLQARYDLG GWRAFAEVANLTNS
Sbjct: 838 QKLDVSAAYNWTGRSLRLVDSSLASRDVYWQARKQIDLQARYDLGQGWRAFAEVANLTNS 897

Query: 899 PVTSVTGPNKDLLKDTFSMGRMIWVGVNYSPKNL 932
           PVTSVTGPNKDLLKDTFSMGRMIWVG+NYSPK+L
Sbjct: 898 PVTSVTGPNKDLLKDTFSMGRMIWVGLNYSPKDL 931


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,772,832
Number of extensions: 114949
Number of successful extensions: 302
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 1
Length of query: 932
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 838
Effective length of database: 1,174,780
Effective search space: 984465640
Effective search space used: 984465640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 135 (56.6 bits)