BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2644.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester phosp...   480   e-137

>gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score =  480 bits (1235), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/293 (82%), Positives = 262/293 (89%), Gaps = 1/293 (0%)

Query: 1   MDQAHAFP-AWRQSALTTPTGVVLVSSHRSCWTETSENSLDGIRRCIAEGIDIGEIDVRT 59
           MD AHA    WRQSALTTPTG VLVSSHRSCWTETSENSLDGIRRCIAEGIDIGEIDVRT
Sbjct: 23  MDPAHADSLTWRQSALTTPTGPVLVSSHRSCWTETSENSLDGIRRCIAEGIDIGEIDVRT 82

Query: 60  TRDGALVLMHDETVDRTTDGQGAVADLSLAQIRSLRLRAHGGGHKAALTARRIPTLQEAL 119
           T+DGALVLMHD+TVDRTT+G+GAV +L+LAQI+ LRL   GG   A LT+RR+PTLQ+AL
Sbjct: 83  TQDGALVLMHDQTVDRTTNGRGAVTELTLAQIQDLRLYTRGGRQGATLTSRRVPTLQQAL 142

Query: 120 AAARGRILLNLDVKAADIGPMVAAIMETDTAHDVLLNINEGVDPQQVAWARSLGIAVQTL 179
           A ARGRI+LNLDVK ADIG MVAAI+ETDTA DVLLNIN GVDPQQVAWARSLGIAVQTL
Sbjct: 143 AVARGRIVLNLDVKDADIGAMVAAILETDTARDVLLNINPGVDPQQVAWARSLGIAVQTL 202

Query: 180 YFDEKTGASGRQAQLQAMARQEPTVLQPIFHDPAVVDAARQAVQGRPVRLLVNTMALDID 239
           YFDEKTGAS R AQLQ MARQEPTVLQ IF DP+VVDAA +A+ GRPVR+LVNTMALDID
Sbjct: 203 YFDEKTGASSRSAQLQVMARQEPTVLQLIFRDPSVVDAAGRALAGRPVRMLVNTMALDID 262

Query: 240 SGRPMNLAGPYLDTVALQHPEQVWGKLIENGVSIIQTDEPQRLLAWLKRKKLR 292
           SGRPM+LAGPYLDTVA+  PEQVWG+LI  GVSIIQTDEPQRLLAWL+R+KLR
Sbjct: 263 SGRPMDLAGPYLDTVAVDDPEQVWGQLIAQGVSIIQTDEPQRLLAWLRRRKLR 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 903,383
Number of extensions: 38154
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)