BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2643.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311917|ref|YP_003776009.1| signal peptide protein [Herbasp...   527   e-151

>gi|300311917|ref|YP_003776009.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  527 bits (1358), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 249/273 (91%), Positives = 262/273 (95%)

Query: 1   MCLIIFAWKVIPGMPLILAANRDEFYARPAAHADWWNDHPHIYAGRDLQGGGTWLGVTRD 60
           MCLIIFAWKVIPGMPLI+AANRDEFYARPA  A WW DHPHIYAGRDLQGGGTWLGVTRD
Sbjct: 1   MCLIIFAWKVIPGMPLIMAANRDEFYARPAVDAGWWKDHPHIYAGRDLQGGGTWLGVTRD 60

Query: 61  GRFAAITNVRAPAERRSDAPTRGQLVADYLAGTLEPQDYLRQIEASAQQYNGFNLLLGNR 120
           GRFAA+TNVRAP+ERR+DAPTRGQLVADYLAG L+PQ YLRQIEA AQQYNGFNLLLGNR
Sbjct: 61  GRFAALTNVRAPSERRTDAPTRGQLVADYLAGNLDPQAYLRQIEAQAQQYNGFNLLLGNR 120

Query: 121 DTMLWYSNRGGEDARNGQPLDYGVYGLSNALLDTPWPKLTRAKAQFASLLCQGAPEETFF 180
           DTMLWYSNRG +D RNGQPLDYGVYG+SNALLDTPWPKLTRAKAQFASLLCQGAPEETFF
Sbjct: 121 DTMLWYSNRGQQDPRNGQPLDYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAPEETFF 180

Query: 181 EMLTDGTRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSTVLRVPIIGEPVLTEQVV 240
           EMLTD TRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCS+V+RVPI+GEPVLTE VV
Sbjct: 181 EMLTDATRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSSVVRVPIVGEPVLTEHVV 240

Query: 241 DPMAMQYSAEPATDKACKIPCKPRVQEASPESG 273
           DPMAMQYSAEPATDKAC+IPCKPR+QEASPE+G
Sbjct: 241 DPMAMQYSAEPATDKACRIPCKPRLQEASPEAG 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,030,743
Number of extensions: 47766
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)