BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2641.p
         (354 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311915|ref|YP_003776007.1| glycine cleavage system protein...   634   0.0  

>gi|300311915|ref|YP_003776007.1| glycine cleavage system protein T
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  634 bits (1634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/360 (86%), Positives = 330/360 (91%), Gaps = 6/360 (1%)

Query: 1   MTDMTPSPSAWRDFLTQQGAQFDAESN------DVLGFGPDAPAPQSLESFMAPLTGLGL 54
           MT+MT SPSAWRDFL QQGAQF+A+S       DV+GF P A APQSLESFMAPLT LGL
Sbjct: 1   MTEMTSSPSAWRDFLAQQGAQFEADSAEPVDHADVIGFAPTAAAPQSLESFMAPLTSLGL 60

Query: 55  IAATGEEAASFLHGQLTNDVQHLDSNAARLAGYCSPKGRLLATLLIWRDAQTIYLQLPRS 114
           IA TGE+AASFLHGQLTNDVQHLD+ +ARLAGYCSPKGRLLAT L+WRD Q  +LQLPRS
Sbjct: 61  IAVTGEDAASFLHGQLTNDVQHLDTGSARLAGYCSPKGRLLATFLMWRDDQASWLQLPRS 120

Query: 115 LQPAIQKRLQMFIMRAKAKLADAGTEYAVLGLVGPAAANALAEWFPVTPAAPYDKLDNSH 174
           LQPAIQKRLQMF+MRAKAKLADA TE  VLGL GPA ANALAEWFPV PAAPYDK+DNSH
Sbjct: 121 LQPAIQKRLQMFVMRAKAKLADASTERGVLGLAGPATANALAEWFPVLPAAPYDKIDNSH 180

Query: 175 GSLIRMADAAGSARYQWIAPVDTLTAAWPKLAQHLKPTASLAWRLSDIRAGVPGIVAATQ 234
           G+LIR+ADAAGS RYQWIA +DTLTAAWP+LAQHL PTASLAWRLS+IRAGVPGIVAATQ
Sbjct: 181 GTLIRLADAAGSPRYQWIAAIDTLTAAWPRLAQHLTPTASLAWRLSEIRAGVPGIVAATQ 240

Query: 235 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAAQAGQEVFA 294
           EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAA+AGQEVFA
Sbjct: 241 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAARAGQEVFA 300

Query: 295 AADPGQPCGMVVNAEALDDGRALALVEMKLAAADDTVHLGAADGPALHFHALPYELADPQ 354
           AADPGQPCGMVVNAEALDDG ALALVEMKLAAA+D VHLGAADGPALHFHALPYELADPQ
Sbjct: 301 AADPGQPCGMVVNAEALDDGHALALVEMKLAAAEDAVHLGAADGPALHFHALPYELADPQ 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,167,721
Number of extensions: 48846
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,212,660
Effective search space: 324992880
Effective search space used: 324992880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)