BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2640.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311914|ref|YP_003776006.1| aminodeoxychorismate lyase [Her...   612   e-176

>gi|300311914|ref|YP_003776006.1| aminodeoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  612 bits (1579), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 307/326 (94%), Positives = 313/326 (96%)

Query: 1   MKKLLATLFVLAALVAAAGVYWSKQPIVPPEGQVIAFTITPGAGVSGAAQQIAAAGVPVN 60
           MKKL  TL VLAALVA AGVYWSKQPIV P GQVIAFTITPGAGV+GAAQQIAAAGVPVN
Sbjct: 1   MKKLFVTLLVLAALVAGAGVYWSKQPIVDPSGQVIAFTITPGAGVNGAAQQIAAAGVPVN 60

Query: 61  PDLFALYARLSGEGARIKAGSYEIKPGYTPQRLLLQLVRGEFAQEALTIIEGWTFKQMRK 120
           PDLFALYARLSGEGARIKAGSYEIKPGYTPQRLL QLVRGEFAQEALT+IEGWTFKQMRK
Sbjct: 61  PDLFALYARLSGEGARIKAGSYEIKPGYTPQRLLQQLVRGEFAQEALTVIEGWTFKQMRK 120

Query: 121 AIAAQPSLKHDTSNWTDQQILAKLTTEYTYPEGLFFPDTYLFAKGASDMQVYKQAFTLMS 180
           AIA QP+LKHDT+ WTDQQILAKLT EYTYPEGLFFPDTYLFAKGASDMQVYKQAF LMS
Sbjct: 121 AIAEQPALKHDTATWTDQQILAKLTNEYTYPEGLFFPDTYLFAKGASDMQVYKQAFALMS 180

Query: 181 KKLNEAWARRDLSLPYRTPYEALIMASIVEKETGQKSERGMVAGVFINRLRTGMLLQTDP 240
           KKLNEAW RRDLSLPYRTPYEALIMASIVEKETGQKSERGMVAGVF+NRLRTGMLLQTDP
Sbjct: 181 KKLNEAWTRRDLSLPYRTPYEALIMASIVEKETGQKSERGMVAGVFVNRLRTGMLLQTDP 240

Query: 241 TVIYGMGDRYQGKIHKVDLLTDTPYNTYTRAGLPPTPIALPGAASLAAALNPDKTEALYF 300
           TVIYGMG+RYQGKI KVDLLTDTPYNTYTRAGLPPTPIALPGAASLAAALNPDKTEALYF
Sbjct: 241 TVIYGMGERYQGKIRKVDLLTDTPYNTYTRAGLPPTPIALPGAASLAAALNPDKTEALYF 300

Query: 301 VARGDGTSHFSSNLNEHNQAVNRYQR 326
           VARGDGTSHFSSNLNEHNQAVNRYQR
Sbjct: 301 VARGDGTSHFSSNLNEHNQAVNRYQR 326


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 977,800
Number of extensions: 40371
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)