BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2636.p (182 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311909|ref|YP_003776001.1| response regulator consisting o... 340 4e-95 gi|300311773|ref|YP_003775865.1| two component response regulato... 134 4e-33 gi|300309981|ref|YP_003774073.1| two component response regulato... 68 4e-13 gi|300313028|ref|YP_003777120.1| two component response regulato... 64 5e-12 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 59 2e-10 >gi|300311909|ref|YP_003776001.1| response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Herbaspirillum seropedicae SmR1] Length = 182 Score = 340 bits (872), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 171/182 (93%), Positives = 173/182 (95%) Query: 1 MSAAFLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDS 60 MSAAFLILDDNDVFA TLARSLARRGFRATVAHSGE ALEAARRERFD+ATIDLQLEKDS Sbjct: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 Query: 61 GLQWVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEG 120 GLQWVSPLRQALP ARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSH+ G Sbjct: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGNG 120 Query: 121 AAAAEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 AAE LPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV Sbjct: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 Query: 181 AR 182 AR Sbjct: 181 AR 182 >gi|300311773|ref|YP_003775865.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 134 bits (337), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 106/177 (59%), Gaps = 7/177 (3%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKD-SGLQ 63 LI++D+ FA TL RS RRG+ +A S EEA + ++ R +A +DL+L + SGL Sbjct: 7 LLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGGNASGLA 66 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAA 123 V L ++VLTG+ASI T V+AIK GA YLAKP+N D I +A H A Sbjct: 67 CVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV---AGV 123 Query: 124 AEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 +E LP A S++ LEWE I VL + + NIS TAR L MHRRTL RKL K+ V Sbjct: 124 SEVELP---ARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRV 177 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 68.2 bits (165), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 7/169 (4%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L+ +D+ V A L RSL G+ A +G EA A + FD +DL L K SGL+ Sbjct: 3 ILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEV 62 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAAA 124 + LR + +L+LT S+ VQ + GAD+Y+AKP + + + + A Sbjct: 63 LRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGG 122 Query: 125 EPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQR 173 P V PLS ++ + R+ E + +AR L + LQR Sbjct: 123 GPT--VIRHGPLS-----YDQVGRIAYIGEQMLELSARELGLLEVLLQR 164 >gi|300313028|ref|YP_003777120.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 64.3 bits (155), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 AFLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQ 63 L++DD S L R+ +G+R +A S E ALE D D+++ +G Q Sbjct: 24 CVLLVDDEQSILSALKRTFRPQGYRLIMATSAEAALEMMAASEVDLVISDMRMPGMNGAQ 83 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADN-YLAKPANVDSILSALSHAAE 119 +++ +RQ P ++LTGY+ I +T+ AI G N YL+KP + +L ++HA E Sbjct: 84 FLAKVRQQWPSTMRILLTGYSEIGSTISAINDGGINHYLSKPWDDRELLLIVAHALE 140 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 52/103 (50%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L+++DN A L + L F+ +A GE A + R E +D +DL L K G Sbjct: 3 LLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGKNV 62 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANV 107 + LR+ +++LT SI V+ + +GAD+YL KP + Sbjct: 63 LRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEI 105 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.128 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 408,173 Number of extensions: 11353 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 12 Length of query: 182 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 102 Effective length of database: 1,241,070 Effective search space: 126589140 Effective search space used: 126589140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)