BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2632.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase...   699   0.0  

>gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase;
           carotene 7,8-desaturase [Herbaspirillum seropedicae
           SmR1]
          Length = 443

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/442 (84%), Positives = 397/442 (89%)

Query: 1   MHNAPRHHAVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELDGQVLDNGQHI 60
           M NAPRH+AVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVEL+ +V+DNGQHI
Sbjct: 1   MSNAPRHYAVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELEERVVDNGQHI 60

Query: 61  LLGAYRATLALMKQVGVDPARALLRLPLQMRYPLAAGSEGMDFVAPRLPAPWHLAVALWR 120
           LLGAYRATLALMKQVGVD A ALLRLPLQMRYPL   +EGMDFVAPRLPAPWH+AVAL R
Sbjct: 61  LLGAYRATLALMKQVGVDSASALLRLPLQMRYPLQGNAEGMDFVAPRLPAPWHVAVALLR 120

Query: 121 AKGLARDDKMALARFSTTARWMGWQLHQDCSVTELLERFEQTPRLIRLMWRPLCIAALNT 180
           AKGL R+DKMALARFSTTARWMGWQLHQDCSV+ELL RF+QTPR+IRLMWRPLCIAALNT
Sbjct: 121 AKGLTREDKMALARFSTTARWMGWQLHQDCSVSELLARFDQTPRVIRLMWRPLCIAALNT 180

Query: 181 APEQASAQVFLNVLRDSLGARRAASDMLIPRLDLGALLPDAAATYLEQRGALVHTGVMVG 240
            PE+ASAQVFLNVLRDSLGARRAASDMLIPRLDL ALLPDAAA YL +RG LV  GV V 
Sbjct: 181 PPERASAQVFLNVLRDSLGARRAASDMLIPRLDLSALLPDAAAAYLAKRGGLVQAGVAVA 240

Query: 241 RLLPGSEAHTWRLQDRAGESLGQFAGVVLATGPEAAAQLLAGQHDTRLLQALQHEPITTC 300
            LLPG +  TWRLQDRAGESLG+FAGVVLATGPEAAAQLL G HDT  L++LQHEPITTC
Sbjct: 241 HLLPGQQDTTWRLQDRAGESLGEFAGVVLATGPEAAAQLLQGLHDTSRLESLQHEPITTC 300

Query: 301 YLQYPDSVRLPAPFLALADDAPRQAWGQFVFDRGQLGGQAGCLAVVVSAAGQAIAEGHAA 360
           YL YP   RLPAPFLALADD  RQAWGQFVFDRGQLGG+AG LAVVVSAAGQAIA+G AA
Sbjct: 301 YLHYPQGARLPAPFLALADDPQRQAWGQFVFDRGQLGGEAGLLAVVVSAAGQAIADGQAA 360

Query: 361 LAAGITRQLATDFALPALATPQWRRVITEKRATFACTPGLQRPDNAAMPAGLALAGDYVA 420
           L  G+TRQLA+DFA P LATP W RVITEKRATFACTPGL RPD+A +PAGLALAGDYVA
Sbjct: 361 LTEGVTRQLASDFADPTLATPGWSRVITEKRATFACTPGLVRPDSADLPAGLALAGDYVA 420

Query: 421 GDYPATLEGAVRSGLAAARLLA 442
           GDYPATLEGAVRS +AAAR +A
Sbjct: 421 GDYPATLEGAVRSAMAAARRVA 442


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,271,230
Number of extensions: 51082
Number of successful extensions: 227
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)