BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2629.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirill...   439   e-124
gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirill...   109   2e-25

>gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 269

 Score =  439 bits (1128), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/269 (82%), Positives = 234/269 (86%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVAAIYAFARSADDIADEGEASSAERLAALQAYEAQLD 60
           MAVDHYENFPVASLLLPARLRPAV  IYAFARSADDIADEG+A+  ERLA L AYEAQLD
Sbjct: 1   MAVDHYENFPVASLLLPARLRPAVTDIYAFARSADDIADEGDAAPEERLAGLHAYEAQLD 60

Query: 61  LIAARVSCTLPLLQRLQQTIAQYALPLQPLRDLLSAFRQDVVTTRYPHYQDLLDYCRRSA 120
           LIA +  C  P+ +RL+ TIA++ LPLQPLRDLLSAFRQDVVTTRY HY DLLDYCRRSA
Sbjct: 61  LIARQQPCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSA 120

Query: 121 NPVGTLMLHLYGAANEENLRDSDAICSALQLINFLQDIAIDWQKARIYLPLEDLERFGVS 180
           NPVGTLMLHLYGAA+EENLRDSDAICSALQLINF QDIAIDWQK RIYLPLEDL RFGV+
Sbjct: 121 NPVGTLMLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVT 180

Query: 181 QDDIAQACVDLRWQQLMRFQTERARALMLAGAPLAKRLPGRIGLELRMVVQGGLRILERI 240
            +DIA    D RWQQLMRF+ ERARALMLAGAPLAKRLPGRIG ELR+VVQGGLRIL RI
Sbjct: 181 PEDIAAGRCDGRWQQLMRFEVERARALMLAGAPLAKRLPGRIGWELRLVVQGGLRILARI 240

Query: 241 EAVQGDVFHHRPKLGKLDWLLVGWRGLRM 269
           E VQGDVF HRPKLGK DWL VG R L M
Sbjct: 241 ERVQGDVFGHRPKLGKADWLAVGGRALTM 269


>gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 127/263 (48%), Gaps = 12/263 (4%)

Query: 8   NFPVASLLLPARLRPAVAAIYAFARSADDIADEGEASSAERLAALQAYEAQLDLIAARVS 67
           +F  + L LP + R A+ A+YAF R  DD  DE E +   R   L  +  +   IAA + 
Sbjct: 17  SFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDTMVAR-TKLMWWRKE---IAAMLE 72

Query: 68  C--TLPLLQRLQQTIAQYALPLQPLRDLLSAFRQDVVTTRYPHYQDLLDYCRRSANPVGT 125
              T P+ + L   +A Y L  + L+ ++     D+  +RY  Y  L  YC   A  VG 
Sbjct: 73  GQPTHPVTKALHPHVATYGLKGEHLQAIIDGMEMDLDQSRYLDYPGLQRYCWHVAGVVGV 132

Query: 126 LMLHLYGAANEENLRDSDAICSALQLINFLQDIAIDWQKARIYLPLEDLERFGVSQDDIA 185
           L   ++G      L  ++ +  A QL N ++D+  D +K RIYLP+ +L++F V+  DI 
Sbjct: 133 LSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADIL 192

Query: 186 QACVDLRWQQLMRFQTERARALM---LAGAPLAKRLPGRIGLELRMVVQGGLRILERIEA 242
            A    R++ LM+FQ ERA+A+     A  P   R   R GL +  + +    +L+ I  
Sbjct: 193 NARHSERFEALMKFQVERAQAVYDEAFALLPREDRRAQRPGLMMAAIYR---TLLDEIAR 249

Query: 243 VQGDVFHHRPKLGKLDWLLVGWR 265
               V H R  L  +  L + W+
Sbjct: 250 DGYHVLHQRISLTPIRKLWLAWK 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,627
Number of extensions: 30263
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)