BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2619.p
         (421 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-bind...   846   0.0  
gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU AT...    98   1e-21

>gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding
           specificity subunit [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/421 (98%), Positives = 420/421 (99%)

Query: 1   MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEAASVESVTG 60
           MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEAASVE+V G
Sbjct: 1   MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEAASVENVAG 60

Query: 61  AKSDLPTPQEITDLLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120
           AKSDLPTPQEIT+LLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG
Sbjct: 61  AKSDLPTPQEITELLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120

Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKG 180
           PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKG
Sbjct: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKG 180

Query: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240
           IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID
Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240

Query: 241 TTNIMFICGGAFDGLAKIISDRSEKSGIGFSASVKSQSQKSNSEVLLNAEPEDLVKFGLI 300
           TTNIMFICGGAFDGLA+IISDRSEKSGIGFSASVKSQ+QKSNSEVLLNAEPEDLVKFGLI
Sbjct: 241 TTNIMFICGGAFDGLARIISDRSEKSGIGFSASVKSQTQKSNSEVLLNAEPEDLVKFGLI 300

Query: 301 PELVGRLPVIATLNELDEEALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAKK 360
           PELVGRLPVIATLNELDE+ALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAKK
Sbjct: 301 PELVGRLPVIATLNELDEDALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAKK 360

Query: 361 ALARKTGARGLRSILEHALLDVMYELPSEQNVAKVVVDENTITNGAKPLLIYHDQPKVSG 420
           ALARKTGARGLRSILEHALLDVMYELPSEQNVAKVVVDENTITNGAKPLLIYHDQPKVSG
Sbjct: 361 ALARKTGARGLRSILEHALLDVMYELPSEQNVAKVVVDENTITNGAKPLLIYHDQPKVSG 420

Query: 421 G 421
           G
Sbjct: 421 G 421


>gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU
           ATPase subunit [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 13/107 (12%)

Query: 67  TPQEITDLLDQYVIGQATAKRILSVAVYNHYKR------LKHLGKKDDVELAKSNILLVG 120
           TP+EI   LD++V+GQA AKR +S+A+ N ++R      L+H       E+   NIL++G
Sbjct: 4   TPKEIVSELDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRH-------EITPKNILMIG 56

Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 167
           PTG GKT +A+ LA++ + PF+  +AT  TE GYVG DV+ II+ L+
Sbjct: 57  PTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLV 103


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,295
Number of extensions: 43467
Number of successful extensions: 239
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,203,190
Effective search space: 400662270
Effective search space used: 400662270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)