BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2618.p
         (802 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311893|ref|YP_003775985.1| ATP-dependent protease LA prote...  1605   0.0  

>gi|300311893|ref|YP_003775985.1| ATP-dependent protease LA protein
           [Herbaspirillum seropedicae SmR1]
          Length = 802

 Score = 1605 bits (4157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/802 (99%), Positives = 799/802 (99%)

Query: 1   MTTPILTEQSQLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAA 60
           MTTPILTEQSQLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAA
Sbjct: 1   MTTPILTEQSQLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAA 60

Query: 61  KDEPSAEDIYEIGCVANILQMLKLPDGTVKVLVEGAQRARIHHISELETHFVADLTPVES 120
           KDEPSAEDIYEIGCVANILQMLKLPDGTVKVLVEGAQRARIHHISEL+THFVADLTPVES
Sbjct: 61  KDEPSAEDIYEIGCVANILQMLKLPDGTVKVLVEGAQRARIHHISELDTHFVADLTPVES 120

Query: 121 EQGDEAEVEAMRRTIVQQFDQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQ 180
           EQGD+AEVEAMRRTIVQQFDQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQ
Sbjct: 121 EQGDDAEVEAMRRTIVQQFDQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQ 180

Query: 181 KQVILEIFNVTKRYEHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQK 240
           KQVILEIFNV KRYEHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQK
Sbjct: 181 KQVILEIFNVAKRYEHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQK 240

Query: 241 ELGEGEDGADLEELEKKIVAAKMPKEALEKAQSELKKLKLMSPMSAEATVVRNYIDTLVA 300
           ELGEGEDGADLEELEKKI AAKMPKEALEKAQSELKKLKLMSPMSAEATVVRNYIDTLVA
Sbjct: 241 ELGEGEDGADLEELEKKIAAAKMPKEALEKAQSELKKLKLMSPMSAEATVVRNYIDTLVA 300

Query: 301 LPWKKKSKVNNDLPNAEKVLEGDHYGLEKVKERILEYLAVQQRVDKLKAPILCFVGPPGV 360
           LPWKKKSKVNNDL NAEKVLEGDHYGLEKVKERILEYLAVQQRVDKLKAPILCFVGPPGV
Sbjct: 301 LPWKKKSKVNNDLTNAEKVLEGDHYGLEKVKERILEYLAVQQRVDKLKAPILCFVGPPGV 360

Query: 361 GKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLF 420
           GKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLF
Sbjct: 361 GKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLF 420

Query: 421 LLDEIDKLGMDFRGDPSSALLEVLDPEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPA 480
           LLDEIDKLGMDFRGDPSSALLEVLDPEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPA
Sbjct: 421 LLDEIDKLGMDFRGDPSSALLEVLDPEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPA 480

Query: 481 LLDRMEVIRLSGYTEDEKTSIAQRYLLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAG 540
           LLDRMEVIRLSGYTEDEKTSIAQRYLLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAG
Sbjct: 481 LLDRMEVIRLSGYTEDEKTSIAQRYLLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAG 540

Query: 541 VRSLEREVSKICRKVVKLLLLKKQEKKVTVTSRNLDKFLGVRRYDFGIAEKENQIGQVVG 600
           VRSLEREVSKICRKVVKLLLLKKQEKKVTVTSRNLDKFLGVRR+DFGIAEKENQIGQVVG
Sbjct: 541 VRSLEREVSKICRKVVKLLLLKKQEKKVTVTSRNLDKFLGVRRFDFGIAEKENQIGQVVG 600

Query: 601 LAWTEVGGDLLTIEAVNMPGKGQIIRTGTLGDVMKESIEAARTVVRSRARKLGIKSEVFE 660
           LAWTEVGGDLLTIEAVNMPGKGQIIRTGTLGDVMKESIEAARTVVRSRARKLGIK+EVFE
Sbjct: 601 LAWTEVGGDLLTIEAVNMPGKGQIIRTGTLGDVMKESIEAARTVVRSRARKLGIKNEVFE 660

Query: 661 KSDIHIHVPEGATPKDGPSAGIAMTTALVSIFSGIPVRADVAMTGEITLRGEVLPIGGLK 720
           KSDIHIHVPEGATPKDGPSAGIAMTTALVSIFSGIPVRADVAMTGEITLRGEVLPIGGLK
Sbjct: 661 KSDIHIHVPEGATPKDGPSAGIAMTTALVSIFSGIPVRADVAMTGEITLRGEVLPIGGLK 720

Query: 721 EKLLAAHRGGIKTVLIPEQNVKDLAEIPDNVKNKLEIIPVRWIDKVLEVALERQPVPLSE 780
           EKLLAAHRGGIKTVLIPEQNVKDLAEIPDNVKNKLEIIPVRWIDKVLEVALERQPVPLSE
Sbjct: 721 EKLLAAHRGGIKTVLIPEQNVKDLAEIPDNVKNKLEIIPVRWIDKVLEVALERQPVPLSE 780

Query: 781 DEAIVEAAVAPKEGATDPVVKH 802
           DEAIVEAAVAPKEGATDPVVKH
Sbjct: 781 DEAIVEAAVAPKEGATDPVVKH 802


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,245,982
Number of extensions: 91255
Number of successful extensions: 387
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 1
Length of query: 802
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 709
Effective length of database: 1,179,515
Effective search space: 836276135
Effective search space used: 836276135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)