BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2615.p (260 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 283 1e-77 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 267 7e-73 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 265 4e-72 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 263 1e-71 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 254 4e-69 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 283 bits (724), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 137/250 (54%), Positives = 183/250 (73%), Gaps = 10/250 (4%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 ++ ++ + K FG HEVLK + + V GEVV ++GPSGSGKST+LRCIN LES ++G IL+ Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 DG+++ ++ R R + GMVFQ+FNL+PH T L+NV E P++V+ R Sbjct: 61 DGQRVDR----------DGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAR 110 Query: 131 GTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDPE 190 EA+ LL++VGL A+ AYP QLSGGQQQRVAIAR+LA++P+ +LFDEPTSALDPE Sbjct: 111 AQARSEAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPE 170 Query: 191 LVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQHG 250 LVGEVLA MR+LA G+TMIVVTHE+GFARE ADRV F+ G ++E+G +V++ PQH Sbjct: 171 LVGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHA 230 Query: 251 RTRAFLSRFL 260 RT+ FL R + Sbjct: 231 RTQDFLRRVI 240 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 267 bits (682), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 129/250 (51%), Positives = 177/250 (70%), Gaps = 10/250 (4%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 ++ + + KRFG +L+GID ++ EVV ++GPSGSGKST LRC+N LE + G I + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 +G ++ + L+ R + GMVFQ+FNL+PH+T L+N++ AP+ V R Sbjct: 61 EGVKLND----------PKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSR 110 Query: 131 GTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDPE 190 A +LL++VGL K A+P QLSGGQQQRVAIARALA++P+++LFDEPTSALDPE Sbjct: 111 REAVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPE 170 Query: 191 LVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQHG 250 LVGEVL M+ LAE+G+TM+VVTHE+GFARE +DRV+F+D G ++E GPP +V+ P H Sbjct: 171 LVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHE 230 Query: 251 RTRAFLSRFL 260 RTR FL + L Sbjct: 231 RTRDFLRKVL 240 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 265 bits (676), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 140/251 (55%), Positives = 177/251 (70%), Gaps = 18/251 (7%) Query: 10 PLVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYIL 69 PL+ I +V KRFG +EVLKGI +DV GEV+ I+G SGSGKSTLLRCIN LESID+G I Sbjct: 2 PLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNIS 61 Query: 70 LDGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRE 129 + G ++G S+ EL R K GM+FQQFNL+PHL+ +NVM AP+ V Sbjct: 62 VAGAKLGA----------SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIV---- 107 Query: 130 RGTVEQEALQL----LEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTS 185 +G E EA++ LE+VGLG K AYP QLSGGQQQRVAIARAL++ PQ LL DE TS Sbjct: 108 KGVSEAEAMKTAKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITS 167 Query: 186 ALDPELVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVIS 245 ALDPELV EVL MR LA++G+T+++VTHE+ FARE +R++FM GKV E GPP+E+ Sbjct: 168 ALDPELVNEVLTVMRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFG 227 Query: 246 RPQHGRTRAFL 256 P+ + F+ Sbjct: 228 NPKTPELQQFI 238 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 263 bits (672), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 139/251 (55%), Positives = 179/251 (71%), Gaps = 5/251 (1%) Query: 10 PLVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYIL 69 P+V + + K FGAH VLK +D+ V +VVV++GPSGSGKST LRC+N LE + G + Sbjct: 4 PIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVK 63 Query: 70 LDGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRE 129 + G + GR+ + +A L R + GMVFQ FNL+PHLT L N+ AP + Sbjct: 64 VCGRPV---VEGGRM--MPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMS 118 Query: 130 RGTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDP 189 R +Q+ALQLLE+VGL KA AYP LSGGQ+QRVAIARALA++PQ++LFDEPTSALDP Sbjct: 119 RKAAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDP 178 Query: 190 ELVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQH 249 ELVGEVL +R+LA +G+TMI+VTHE+GFARE AD V+ MD G ++EAGPP + + PQ Sbjct: 179 ELVGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQ 238 Query: 250 GRTRAFLSRFL 260 RTR+FL L Sbjct: 239 ARTRSFLQTML 249 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 254 bits (649), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 135/246 (54%), Positives = 168/246 (68%), Gaps = 10/246 (4%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 +V + V KRFG++ VL GI++ + GEVVV++GPSGSGKSTLLRCIN LE ID G +L+ Sbjct: 1 MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 DG I + +R + R++ GMVFQQFNL+P LTAL+NV P HV Sbjct: 61 DG--ISVLSGSSSVRAI--------RQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASS 110 Query: 131 GTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDPE 190 A +LL +VGL + H YP +LSGGQQQRVAIARALAV+P+L+LFDEPTSALDPE Sbjct: 111 EEANALASELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPE 170 Query: 191 LVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQHG 250 L EVL M+SLAE+G+TMIVVTHEI FAR R+IFM+ G + G P E+I + Sbjct: 171 LRQEVLRVMQSLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNPGELIENSCNP 230 Query: 251 RTRAFL 256 R R FL Sbjct: 231 RLREFL 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 836,223 Number of extensions: 35563 Number of successful extensions: 594 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 147 Length of query: 260 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 177 Effective length of database: 1,226,865 Effective search space: 217155105 Effective search space used: 217155105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)