BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2613.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/sign...    57   2e-09

>gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/signal
           transduction system periplasmic
           protein/domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 43  LPEQITKEGQIVAVNHGSFPPYLIAQ-STSSVQGASAELAEAVAQVWGVKIVHQSVSGLS 101
           L + +   G +     G++PP+      T  + G   ++A+ +A   GVK V  +    S
Sbjct: 29  LLQSVKSSGTLKVALEGNYPPFNFKDPKTGELTGFEVDVAKLLAAKLGVKPVFTTTE-WS 87

Query: 102 AILIGIKSGRYTLAFGPIGDYPERQASVDFID-FVEESVAFAVQKGNPQTINSIKDTCGK 160
            IL G+ +G+Y +    +G   ERQ + DF D +   S    V+K   +   S++D  GK
Sbjct: 88  GILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQLIVRKDEKREFKSLEDLKGK 147

Query: 161 RIAVMGGGSAEKVIHQFSTGCVKQGQPPVTVQIYNDQPTALLSVRSDRADGFFSSHAPLK 220
           ++ +  G + E+           +  P + V+ Y   P  L  + + R D   +    + 
Sbjct: 148 KLGLGQGTNFEQKA---------KAVPGIDVRTYPGSPEYLADLAAGRIDAALNDSLLVG 198

Query: 221 YFVKKTH 227
           Y +K T+
Sbjct: 199 YILKSTN 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 904,609
Number of extensions: 38245
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)