BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2609.p (547 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 412 e-116 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 408 e-115 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 379 e-106 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 364 e-102 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 363 e-101 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/519 (49%), Positives = 350/519 (67%) Query: 1 MKLANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKN 60 MK+++ I VRLG FA +++++ V A VG++N + + IVN++Y +AL QI + Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NGYKANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQTS 120 L N ++A PE KY+D +E ++E ++ + L A Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDSLE 180 AR+ Y K L+ ++R EAT +Q +YF V +MV+ + M + Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 AAEEGRMAVIQMIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQGDLSYRLQAN 240 A+ A+ M+VL+GVAV+L+++ +LITRSIT P+ AV +A VA GDL+ +++A Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 GKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQASSLEE 300 KDE LL AL+ M+DNLH V+ VR GT I+ A+RE+A GN+ LS RTEQQA +LEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGKIADI 360 TASAME+LTS VRQNADNARQA+ LA +AS VA++GG+ V +VV M I+ +S KI DI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSLIEGS 420 I+VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AAKEIKSLI+ S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQMDQMT 480 V V++GS +V Q AT++EV+AS+K TD++ +I+A+S EQS+GIEQINQAI QMD++T Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QENSALVEQNAAAAKALQSQAEQLSALMGRFKLSELLTH 519 Q+N+ALVEQ AAAA++LQ Q+ +LS +G F+L H Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAH 520 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 408 bits (1048), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/522 (49%), Positives = 355/522 (68%), Gaps = 5/522 (0%) Query: 1 MKLANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKN 60 MKL + I VRL FAV++ ++ + VG+++ SS + IV ++Y+ IAL+ +I++ Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 NGYKANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQTS 120 N A L N LL E + +Y+D A TEA K+E +L + + + L+ Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 ARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDSL- 179 ARSAY K L+K +++ EA L + Q +YF ++D+ V + K ++ S+ Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFV-AFQKSLMEQSVT 179 Query: 180 EAAEEGRMAVIQMIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQGDLSYRLQA 239 E + + A+ M+ L+ VA+ L + L+TRSIT P+ AV +A VA GDL+ ++ A Sbjct: 180 EGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGA 239 Query: 240 NGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQASSLE 299 KDE LL AL+ M+D+LH VS VR G+ I+ A+ E+A GN+ LS RTE+QA +LE Sbjct: 240 TSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALE 299 Query: 300 ETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGKIAD 359 ETASAME+LTS V+QNADNARQA+ LA +AS+VAV+GG+ V QVV M I+ +S KI D Sbjct: 300 ETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVD 359 Query: 360 IITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSLIEG 419 II+VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AAKEIK+LI+ Sbjct: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDD 419 Query: 420 SVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQMDQM 479 SV+ V GS +VEQ T+ EV+AS++ TD++ +ISA+S EQS+GIEQIN AI+QMDQ+ Sbjct: 420 SVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQV 479 Query: 480 TQENSALVEQNAAAAKALQSQAEQLSALMGRFKLSELLTHGT 521 TQ+N+ALVE+ AAAA++LQ Q+ +LSA + FKLS +H T Sbjct: 480 TQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLS---SHDT 518 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/525 (46%), Positives = 340/525 (64%), Gaps = 2/525 (0%) Query: 1 MKLANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKN 60 M+ N +I RL AF++++L+I +G+ + N ++ +VN++Y+ IA+ N I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 NGYKANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQTS 120 L N LL T P A L NT+ Y +L L+ + + KA + T Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 ARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDSLE 180 R +Y ++ L + A L +M LQ YF +D++ ++ K +++ S++ Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQK-LMDQSVD 179 Query: 181 AAEEGRMAVIQMIVLAGV-AVVLASVIGVLITRSITAPVRHAVMLAETVAQGDLSYRLQA 239 AE ++V+AGV A A+ I I+RSIT P+ AV +AETVA GDL+ + A Sbjct: 180 QAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAA 239 Query: 240 NGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQASSLE 299 + DE RLL AL M+ L V VR GT ++ A+ ++A GN+ LS RTE+QAS+LE Sbjct: 240 HSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALE 299 Query: 300 ETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGKIAD 359 ETAS++E+LTS+V+QNAD+ R++SELA +AS VA +GG +V+QVV M AI+ SS KI D Sbjct: 300 ETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVD 359 Query: 360 IITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSLIEG 419 II+VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVRGLAQRSA AAKEIK LI Sbjct: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELIND 419 Query: 420 SVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQMDQM 479 SVN V +G+ +V Q +T+D V+ SI+ + ++ +ISA+++EQS+GIEQ+NQAI QMD Sbjct: 420 SVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNT 479 Query: 480 TQENSALVEQNAAAAKALQSQAEQLSALMGRFKLSELLTHGTTHS 524 TQ+N+ALVE+ AAAA+ALQ QA++L L+G F+L E+ G S Sbjct: 480 TQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPAPS 524 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 364 bits (935), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/519 (44%), Positives = 331/519 (63%), Gaps = 11/519 (2%) Query: 3 LANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKNNG 62 N + VRL FA ++ L+ V ++ ++ N I+ IVN++Y + + +++ Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 Query: 63 YKANAVLSNILLAT-TPEASAKYMDEYAGLRKANTEAYQKLEG----LLDSDKTKALYAE 117 + L I + A+ K + K EA K+ + K KAL Sbjct: 65 NEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKAL--- 121 Query: 118 QTSARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVND 177 AR A+ + F AL+K A ++ Q Y + +S ++ + Sbjct: 122 -DEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180 Query: 178 SLEAAEEGRMAVIQMIVLAGVAVVLASVI-GVLITRSITAPVRHAVMLAETVAQGDLSYR 236 +A +G MA I++ + +A VLA++I G L+ RSI P+ AV +AE VA GDL+ R Sbjct: 181 GAKAVADGAMA-IEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTR 239 Query: 237 LQANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQAS 296 ++ + +DE +L+ AL+ M+DNL + VS VR GT +I A+ E+A GN+ LS RTEQQA Sbjct: 240 IEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAG 299 Query: 297 SLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGK 356 SLEETASAME++TS VRQNADNARQA+++AVSAS++A++GG V +VV+ M I+ SS K Sbjct: 300 SLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRK 359 Query: 357 IADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSL 416 I DII VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVA+EVR LAQRSA AAKEIK+L Sbjct: 360 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKAL 419 Query: 417 IEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQM 476 I SV V+ GS +V Q AT+++V++S++ TD++ +ISA+S EQS GIE+IN+A++QM Sbjct: 420 IADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQM 479 Query: 477 DQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKLSE 515 D+ TQ+N+ALVEQ AAAAK++Q QA +L+ + FKL + Sbjct: 480 DEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ 518 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/513 (44%), Positives = 329/513 (64%), Gaps = 8/513 (1%) Query: 5 NFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKNNGYK 64 N NI +L +FAVV+ L ++ + I+ N IV++ + + +++ + Sbjct: 6 NLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSLPP 65 Query: 65 ANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQTSARSA 124 ++ A TP+ A A T E + + K YA+ +A Sbjct: 66 LRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFLKNLTA 125 Query: 125 YGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDSLEAAEE 184 Y + + ++Q E L+ GD ++L Y MV + +++ K + S +A EE Sbjct: 126 YVKVDEQLAEMAANQQYDETRALFNGDSAKL---YRSMVGNL-DAIVKINTSGSAQADEE 181 Query: 185 G----RMAVIQMIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQGDLSYRLQAN 240 R A ++ L V++AS++ L+ +++ P++ AV +A+ VA+GDL+ R++ Sbjct: 182 ASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRPA 241 Query: 241 GKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQASSLEE 300 G+DE L+ AL+ M+++L D VS VR GT I A+ E+A+GN+ LS+RTEQQA SLEE Sbjct: 242 GRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEE 301 Query: 301 TASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGKIADI 360 TASAME+LTS V QNADNARQA++LA +ASD+A +GG V QVV M I+ SS +IADI Sbjct: 302 TASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADI 361 Query: 361 ITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSLIEGS 420 I+VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AAKEIK LI+ S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDS 421 Query: 421 VNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQMDQMT 480 V V AGS +VE+ +T+ EV+AS++ TD++ +ISA+++EQS GI ++N AI+QMD+ T Sbjct: 422 VQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETT 481 Query: 481 QENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 Q+N+ALVEQ AAAA +L+ QA L+A++G+FKL Sbjct: 482 QQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,160,871 Number of extensions: 36691 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 71 Length of query: 547 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 457 Effective length of database: 1,193,720 Effective search space: 545530040 Effective search space used: 545530040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)