BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2608.p
         (858 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase ox...   609   e-175

>gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score =  609 bits (1571), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 344/866 (39%), Positives = 492/866 (56%), Gaps = 49/866 (5%)

Query: 24  VQSFIEAYRNEGYRIADIDPLGTISLPEIAALLPQTHALEDED--IILAQHRLLDGLGLT 81
           V   I  YR+ G R A++DPL     P I  L P  +   D D  I+   +    G    
Sbjct: 97  VTQLIAGYRDLGSRFANLDPLQRQERPNIPELDPSFYGFTDADMDIVFNINNTYFGPETA 156

Query: 82  TVKELTHHLSRLFCAALALDASGVRDEARRQWLFARLAARDHGAEPDAPERAAVLARLAA 141
           ++++L   L   +  ++  + + + D A  +WL  RL          + ++  +L RL A
Sbjct: 157 SLRDLLQMLRDTYTRSIGAEFTYISDMAEVRWLEERLEPTRAVPSFSSEKKKHILERLTA 216

Query: 142 AEQWEHYLQQDYPQAKRFSLEGCESLLLLMDALVERSSFYQLDQLFMAMPHRGRLNLLVN 201
           AE  E YL   Y   KRFSLEG ES +  +D  ++R+    + ++ + M HRGRLN+LVN
Sbjct: 217 AEGLERYLHTKYVGQKRFSLEGGESFIASLDETIQRAGEKGVQEIVIGMAHRGRLNVLVN 276

Query: 202 LMQMPAAEIVAYFDPERTTPAAANAVDLPYHLGAQTVRATAHGKVGLLLAHNPSHLESAY 261
           ++     E+ + F+        A   D+ YH G  +  +T  G V L LA NPSHLE   
Sbjct: 277 ILGKTPQELFSEFEGRHADDLPAG--DVKYHQGFSSDVSTPGGPVHLSLAFNPSHLEIVN 334

Query: 262 PVLLGMTRGYRARHPQAP----LPASVVIHGDAAFCGQGVVMESLKLAQHPGYGVGGTVH 317
           PV+ G  +    R         LP  +++HGDAAF GQGVVME+L LAQ  GYG GGTVH
Sbjct: 335 PVVEGSVKARMDRRGDKDGSQVLP--ILVHGDAAFAGQGVVMETLNLAQTRGYGTGGTVH 392

Query: 318 VIVNNQIGFTTPNPLDPENHGYCTDIARIVGAPVLHVNADQPEMVLRAARIAFDYRMQFG 377
           +++NNQIGFTT +P D  +  YC+D+ +++ APVLHVN D PE V+ A +IA DYRM+F 
Sbjct: 393 IVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGDDPEAVVFATQIAVDYRMKFK 452

Query: 378 ADVVIDLVGYRRWGHAEQDTATVTQPLLHGFIDKHPPVTQLYA-----QAGWP--GSEEG 430
            D+V+D++ +R+ GH EQDT  +TQPL++  I +HP   +LYA     Q   P  G EE 
Sbjct: 453 KDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRKLYADKLVTQQTIPADGGEEL 512

Query: 431 MALLAASSQQA-------LAAFKA----------SRVGSAAAAAAVPVSPAPVAGPDLLR 473
           +    A+           L  FK+          +R  + AA  AVP++           
Sbjct: 513 VKAYRAAMDAGKHAIDPVLTNFKSKYAVDWLPFLNRKWTDAAETAVPMA----------E 562

Query: 474 IRQFVERMTHLPDGFEAHPTILRLIAQWQDCVSAPEQACSWNFAENMAYASLLAEGHGVR 533
           +++   ++T +P+GF+ H  + +++   +  +   E    W   E++AYASL++ G+ VR
Sbjct: 563 LKRLAAKITTVPEGFKVHSLVEKVLND-RAAMGRGEMNLDWGMGEHLAYASLVSSGYAVR 621

Query: 534 ISGMDVQRGTFMQRHAVWHAVDTAQGVQQAYWPLRQVAAPSAALEVINSPLSEEAVVGFE 593
           ++G D  RGTF  RHAV H  +  +     + PL+ VA   +   VI+S LSEEAV+ FE
Sbjct: 622 LTGQDAGRGTFTHRHAVLHDQNRERWDAGTFIPLQNVAENQSTFTVIDSVLSEEAVLAFE 681

Query: 594 YGFSVQAGANALVIWEAQFGDFVNGAQIMIDQYVTSGGGKWGYASALTLLLPHGYEGVGP 653
           YG+S  A  N L IWEAQFGDF NGAQ+++DQ+++SG  KWG AS L  +LPHGYEG GP
Sbjct: 682 YGYST-AEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWGRASGLVQMLPHGYEGQGP 740

Query: 654 EHSTGYLSRMLLLCAGQNIRVACPTTSAQWFHLLREQALQAER-PLVVFTPKSVLHAQAR 712
           EHS+  + R L LCA  N++V  PTT+AQ FHLLR Q ++  R PL++ TPKS+L  +  
Sbjct: 741 EHSSARIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLFRKPLIIMTPKSLLRNK-D 799

Query: 713 SHSPLSALLQGAFQP-LSDDPEAPPVQQVRRVVLCSGKVRHDLAAARSQTVNDETVLLSV 771
           + SPLS L +G+FQ  + +  E    ++V+R+V CSGKV +DL  AR +    +T ++ V
Sbjct: 800 AGSPLSDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYYDLVNARKERGQTDTAIIRV 859

Query: 772 EQLYPFPTQALGECLNSYPNLAEVIWVQEEERNQGAWLCVRDAIEAALPAGVPLRAVYRP 831
           EQLYPFP +A    L  +PN  E++W Q+E +NQGAWL ++  I   L  G  L    RP
Sbjct: 860 EQLYPFPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQHNIFENLSEGQKLAYAGRP 919

Query: 832 DTASGPTASKATHYAQQAALMQAVFA 857
            +AS        HYAQQ AL++  FA
Sbjct: 920 ASASPAVGYYDKHYAQQKALIETAFA 945


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,768,740
Number of extensions: 120115
Number of successful extensions: 404
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 1
Length of query: 858
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 765
Effective length of database: 1,179,515
Effective search space: 902328975
Effective search space used: 902328975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)