BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2607.p (598 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311887|ref|YP_003775979.1| two component sensor histidine ... 990 0.0 gi|300311810|ref|YP_003775902.1| two component sensor histidine ... 130 4e-31 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 113 4e-26 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 96 7e-21 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 92 1e-19 >gi|300311887|ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 633 Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/597 (80%), Positives = 535/597 (89%) Query: 1 MPITRQSGLAGASTGIFFLLALLLSLGVAGFSYHSVRDFEQHAVWLQHSYTVLNKLEEIN 60 MPIT+QS LA ASTGIFFLLALLLS+GVAGFSYHSVRDFEQ AVWLQH++TV+N LEE N Sbjct: 24 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN 83 Query: 61 ATLRETVGNSRSYVVSGQEEYRGNFDAGERQVNVLLRELRNLVNDNPQQTQLLGRTDDLV 120 + LRETVGNSR YV+SG EEYR +F+AG R V L+++LR L++DN +Q + L T+DLV Sbjct: 84 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV 143 Query: 121 AQRLAMSRQLMALNPEEGRARVLEGKDLGDRIRSNVELMKGNENTLLATRAKDTAVSANL 180 QRLA+SR+++AL PE+ R RVLEGK L D IR MKGNEN LLA R++DT+ SA+L Sbjct: 144 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL 203 Query: 181 TIFMVISGSLLSIALLLLVYRKLRREMARRVEAQQRAQAYSDEIEDLYNNAPCGYHSVDE 240 TIFMV+SGSLLS+ALL+LVY KLRREM RR++AQQRAQAYSDEIEDLYNNAPCGYHSVDE Sbjct: 204 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE 263 Query: 241 SNKIIIKINDTELKWLGYTRDQVVGRMTQADLLAPASAERYQRELYPQFLLKREISGIDL 300 S+K IIKINDTELKWLGYTR+QVVGRMT DLLAPASAERY REL PQF+LKREISGIDL Sbjct: 264 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL 323 Query: 301 NFRRADGSEFTALVNATAIPSRDQRKLISRTVIYDISERKRAEEEIEALNADLERQAQHL 360 N+RRADGSEFTALVNATAIPSRD+ KLISRTVIYDIS+RKRAEEEIEALNADL+RQA HL Sbjct: 324 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL 383 Query: 361 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAQAIDDKGREQLQVIRRNVRKMDA 420 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYA AID+KGREQLQVIRRNVRKMD Sbjct: 384 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE 443 Query: 421 LINDLLKLAKSTTGELTLQRFSMDELVGQVIAGLRQENPGVAFEVPHLEGAVANRGLIAQ 480 LINDLLKLAKSTTGELTL+RFSMD+LV QVIAGLR+ENP V F+VP LEGAVANRGLI Q Sbjct: 444 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ 503 Query: 481 VWENLLANAVKFSSKSEQPLVRVSMEVSADEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 540 VWENLL+NAVKFSSKSEQP VRVSM+V +EYIYGVHDNGVGFDMRYAHKLFGTFQRLHR Sbjct: 504 VWENLLSNAVKFSSKSEQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 563 Query: 541 QEEYAGTGIGLALVQRIVIRHSGRVWAESQPKQGASFYFALPRKHVLPGVGEAHRAA 597 QEEYAGTGIGLALVQRIVIRH+GRVWA+S+P +GASFYF+LPRK + P + E A Sbjct: 564 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREAG 620 >gi|300311810|ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 535 Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 104/333 (31%), Positives = 159/333 (47%), Gaps = 46/333 (13%) Query: 295 ISGIDLNFRR-ADGSEFTALVNATAIPSRDQRKLISRTVIYDISER-KRAEEEIEALNAD 352 IS + +N RR ADG A V D+ L+ ++ SER + A ++ E + Sbjct: 209 ISVLIVNARRLADGLPLAARVKG-----HDEISLLD-DALHRSSERLQEASQQSEQYRSQ 262 Query: 353 LERQAQHLHSVNKEL-------ESFSYSVSHDLRAPLRAISGYAM--------------- 390 LER+A+ L +N +L E F YSVSHDLR+PL + G++ Sbjct: 263 LERRARELTELNADLLQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEIGHATTDLLNAVQA 322 Query: 391 --ILEEDYAQ---AIDDKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQRFSMDE 445 + + D A+ + D + L+ I+ V + +I+ +L+L+++ E M+ Sbjct: 323 LPVPDADKAKLRSVVADDIQPALRFIQNAVTRSAGIIDSMLRLSRAGRVEYQPVMLDMNV 382 Query: 446 LVGQVIAGLRQE--NPGVAFEV-PHLEGAVANRGLIAQVWENLLANAVKFSSKSEQPLVR 502 + +++A + + G EV P L A + I QV NL+ NAV + + + Sbjct: 383 IAQRIVAAMSGSIRDKGAVVEVAPELPPAFGDPTAIEQVLGNLVGNAVNYLDPARPGRIT 442 Query: 503 V-------SMEVSADEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQ 555 + + +Y V DNG+G Y HK+F FQRLH G GIGLALV+ Sbjct: 443 IDHLREEGGAATGPETNVYVVRDNGLGIPPAYMHKMFIAFQRLH-GNAAPGEGIGLALVK 501 Query: 556 RIVIRHSGRVWAESQPKQGASFYFALPRKHVLP 588 R+V RH GR+W ES QG+SFY ALP + P Sbjct: 502 RVVERHGGRIWVESTEGQGSSFYVALPARPPAP 534 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 164/690 (23%), Positives = 287/690 (41%), Gaps = 135/690 (19%) Query: 16 IFFLLALLLSLGVAGFSYHSVRDFEQHAVWLQHSYTVLNKLEEINATLRETVGNSRSYVV 75 I F +A+L + +A F+Y + Q A + H+ V +L+ + +TL++ + R Y++ Sbjct: 21 IGFAVAILAVVLIALFTYEASVSRGQAANAVSHTMKVREQLQSLVSTLKDAETSQRGYLL 80 Query: 76 SGQEEYRGNFDAGERQVNVLLRELRNLVNDNPQQTQLLGRTDDLVAQRLAMSRQLMALNP 135 +G E Y ++ + + LR L+ DNP Q Q L + + + +L + + L Sbjct: 81 TGTESYLSPYNQARAALPGEIARLRALLADNPDQLQRLSQIEGITNDKLQELAETIDLRR 140 Query: 136 EEGRARVL------EGKDLGDRIRSNVELMKGNENTLLATRAKDTAVSANLTIFMVISGS 189 + A L GK DR+R+ M+G E LLA R D + + + + GS Sbjct: 141 KGDAAAALAVVQSDRGKMSMDRVRTLAREMEGEERDLLAARQSDWRDAVSFSTAVAWGGS 200 Query: 190 LLSIALLLLV-------YRKLRRE---------MARRVEAQQRAQAYSDEIEDL---YNN 230 L + L++ YR+ ++ +A R++ +QR A D Y N Sbjct: 201 GLLLVLIVAAAMTTSRDYRQREKQAWIRAGQMGLAERLQGEQRLDALGDNTLSFLTAYLN 260 Query: 231 APCG---------------YHSVDESNKI------------------IIKINDTELKWLG 257 A G H++D+++ + + D +L Sbjct: 261 AQVGAIYLRSDGGDFERFASHALDDADGPRTLHSGQGLLGQAAKLNRAMHVKDVPEDYL- 319 Query: 258 YTRDQVVGRMTQADLLA-PASAER---------YQRELYPQF--LLKREISGIDLNFRRA 305 T VGR +L+ PASA+ + R++ P+ LL R I + R + Sbjct: 320 -TISSAVGRRQPRELMVVPASADGMVQAVFELGFLRQVRPEEEELLARLSDQIAIAVRSS 378 Query: 306 -DGSEFTALVNATAIPSRD----QRKLISRTVIYDISERKRA-----------EEEIEAL 349 D + L+ T S + Q +L R ++ E+ +A + E+E Sbjct: 379 KDRTRLEELLEETQRQSEELQAQQEEL--RVNNEELEEQGQALKASQLRLETQQAELEET 436 Query: 350 NADLERQAQ---------------------HLHSVNKELESFSYSVSHDLRAPLRAISGY 388 NA LE Q Q L N+ F ++SH+LR PL + Sbjct: 437 NAQLEEQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLIL 496 Query: 389 AMILEEDYAQAIDDKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTL--QRFSMDEL 446 A +L ++ + D+ Q I + ALIND+L L+K G+L + + F + +L Sbjct: 497 AKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKL 556 Query: 447 VGQVIA--GLRQENPGVAFEVPHLEGAVANR-----GLIAQVWENLLANAVKFSSKSEQP 499 ++ A + + G+ F+V +E V R + Q+ +NLL+NA+KF+ K E Sbjct: 557 ADELSASFAITAQQKGLGFKV-EVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGE-- 613 Query: 500 LVRVSMEVSAD---EYIYGVHDNGVGFDMRYAHKLFGTFQR----LHRQEEYAGTGIGLA 552 VS+ + D + V D G+G +F F++ HR+ Y GTG+GL+ Sbjct: 614 ---VSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRK--YGGTGLGLS 668 Query: 553 LVQRIVIRHSGRVWAESQPKQGASFYFALP 582 + + + G + S+ +G+ F +LP Sbjct: 669 ISRDLAHLLGGDIRVTSRLGEGSIFTLSLP 698 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 20/227 (8%) Query: 369 SFSYSVSHDLRAPLRAISGYAMILEEDYAQAIDDKGREQLQVIRRNVRKMDALINDLLKL 428 S ++SHDLR PL ++ G A +L + +DD R + I +KM L+N+LL + Sbjct: 710 SLLSAISHDLRTPLTSLVGSADVLAAN--ARLDDDARAMARTISEQSQKMVGLMNNLLDM 767 Query: 429 AKSTTGELTLQR--FSMDELVGQVIAGL------RQENPGVAFEVPHLEGAVANRGLIAQ 480 A+ G +TL R +++EL G + L RQ + +A E+P L + L+ + Sbjct: 768 ARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELPLLR---VDAVLLER 824 Query: 481 VWENLLANAVKFSSKSEQPLVRVSMEV----SADEYIYGVHDNGVGFDMRYAHKLFGTFQ 536 V NL+ NA+K+S + +S V A + V D G GF F F Sbjct: 825 VLANLVENAIKYSPPGTP--IGISAHVEHGDGAPQVKVCVMDQGRGFPPTMTQHAFEKFT 882 Query: 537 RLHRQEEYAGTGIGLALVQRIVIRHSGRVW-AESQPKQGASFYFALP 582 R + G G+GLA+ + I+ H GR+W A + QGA+ F LP Sbjct: 883 RGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLP 929 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 115/240 (47%), Gaps = 30/240 (12%) Query: 362 SVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAQAIDDKGREQLQVIRRNVRKMDAL 421 SV + + F ++SH+LR PL AI G+ L D++ A D+ + LQVI RN R + Sbjct: 45 SVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSDA--DRLVKGLQVIERNARLQAQM 102 Query: 422 INDLLKLAKSTTGELTLQRFSMD--ELVGQVIAGLRQENPGVAFEVPHLEGAVANRGLI- 478 + DLL +++ G+L L+ MD + + IA +R P L A+ G+I Sbjct: 103 VEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVR---PAAEARQIELHPALGQGGVIL 159 Query: 479 ------AQVWENLLANAVKFSSKSEQPLVRVSMEVSADEYIYGVHDNGVGFDMRYAHKLF 532 QV NLL NA+KF+ + Q V +S+ D V DNG G + +F Sbjct: 160 GDPARLQQVVWNLLMNAIKFTPR--QGRVSLSLRQHDDTVALEVSDNGRGIKGEFLGSVF 217 Query: 533 GTFQRLHRQEEY---------AGTGIGLALVQRIVIRHSGRVWAESQ-PKQGASFYFALP 582 F QE+ +G G+GLA+ + +V H G++ A S P GA+F LP Sbjct: 218 DRFT----QEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMGAAFTVTLP 273 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,594,441 Number of extensions: 61505 Number of successful extensions: 366 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 33 Length of query: 598 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 507 Effective length of database: 1,188,985 Effective search space: 602815395 Effective search space used: 602815395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)