BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2604.p (293 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 583 e-168 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 262 2e-71 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 224 9e-60 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 223 2e-59 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 218 6e-58 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 583 bits (1504), Expect = e-168, Method: Compositional matrix adjust. Identities = 283/293 (96%), Positives = 289/293 (98%) Query: 1 MNTTMKRHLSSEILPAGLPPVASPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTD 60 MNTTMKRHLSSEILP+GLPPVASPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTD Sbjct: 1 MNTTMKRHLSSEILPSGLPPVASPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTD 60 Query: 61 ISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQILYRGQPRLGMHPSSIARQGIA 120 ISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG+ILYRGQPR GMHPS+IARQGIA Sbjct: 61 ISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIA 120 Query: 121 RTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIAHRRKVEEVIDFLEI 180 RTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEI HRRKVE+VIDFLEI Sbjct: 121 RTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEI 180 Query: 181 QHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQF 240 QHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQF Sbjct: 181 QHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQF 240 Query: 241 GTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMNNPEVIKAYLGTSH 293 GTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTP+EVM N +VIKAYLGTSH Sbjct: 241 GTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGTSH 293 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 262 bits (670), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/253 (51%), Positives = 176/253 (69%), Gaps = 2/253 (0%) Query: 42 ILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQILY 101 +L L+ +SLSFGGV+AL + + E EI A+IGPNGAGKSS++NV++G+Y P +G + Sbjct: 8 VLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 Query: 102 RGQPRLGMHPSS-IARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAA 160 G+ RL P++ + R G+ARTFQN+ALFKG++V DNI+ GR MR+ + + G A Sbjct: 68 GGR-RLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRA 126 Query: 161 RNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAG 220 R E I R + E+++ FL+++ + VG LPYGLQKRVELARAL A P +LLLDEPMAG Sbjct: 127 RRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAG 186 Query: 221 MNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMN 280 M V EK +M F+ DQF T I+LIEHD+G+V +SDRVVVL +G KI DG P V Sbjct: 187 MTVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQ 246 Query: 281 NPEVIKAYLGTSH 293 + VI+AYLG + Sbjct: 247 DAAVIEAYLGVAQ 259 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 224 bits (570), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 110/256 (42%), Positives = 159/256 (62%), Gaps = 1/256 (0%) Query: 38 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 97 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 98 QILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWW 157 G+P P +A+ GIARTFQNI LF MTVL+N+M G + + R + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 158 GAARNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEP 217 AAR EE A R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 218 MAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDE 277 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 278 VMNNPEVIKAYLGTSH 293 V NP VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 223 bits (567), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/256 (42%), Positives = 159/256 (62%), Gaps = 1/256 (0%) Query: 38 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 97 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 98 QILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWW 157 G+P P +A+ GIARTFQNI LF MTVL+N+M G + + + + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 158 GAARNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEP 217 AAR EE A R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 218 MAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDE 277 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 278 VMNNPEVIKAYLGTSH 293 V NP VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 218 bits (554), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 107/252 (42%), Positives = 168/252 (66%), Gaps = 2/252 (0%) Query: 40 EVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQI 99 + +L++ N+S+ FGG+ A+ +S V+E E+ AIIGPNGAGK+++ N I+G Y P G+I Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 100 LYRGQPRLGMHPS-SIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWG 158 + G + PS +A+QG+ RTFQNI LFK MTV++N++ ++ ++ + LLS + Sbjct: 66 MLDG-ASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTP 124 Query: 159 AARNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPM 218 A R E ++ +D L + + G L YGLQ+RVE+AR + +P +LLLDEP Sbjct: 125 AYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPA 184 Query: 219 AGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEV 278 AG+N +EKQ++ + I + + G ++LIEHDM ++M ISDR++V+++GK I GTP++V Sbjct: 185 AGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQV 244 Query: 279 MNNPEVIKAYLG 290 ++ VIKAYLG Sbjct: 245 RSDERVIKAYLG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 950,145 Number of extensions: 41913 Number of successful extensions: 539 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 137 Length of query: 293 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 209 Effective length of database: 1,222,130 Effective search space: 255425170 Effective search space used: 255425170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)