BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2600.p (288 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 552 e-158 gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC t... 257 1e-69 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 221 7e-59 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 199 2e-52 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 199 2e-52 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 552 bits (1423), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/288 (95%), Positives = 281/288 (97%) Query: 1 MTMNATSLSTSAAAAAVAPASMGKALSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGA 60 MTMNAT + TSAA + APA++ KAL+INNIEVIYDHVILVLKGVSLDVPEG+IVALLGA Sbjct: 1 MTMNATPIQTSAAVPSAAPATVAKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGA 60 Query: 61 NGAGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGH 120 NGAGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGH Sbjct: 61 NGAGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGH 120 Query: 121 LTVEENLLTGAYTRGISHAEVKHELEKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAM 180 LTVEENLLTGAYTRGIS+AEVKHELEKIY YFPRLKVRRKSQSGYTSGGEQQMTAIGRAM Sbjct: 121 LTVEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAM 180 Query: 181 MAKPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILE 240 MAKPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILE Sbjct: 181 MAKPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILE 240 Query: 241 NGRVVMEGAASELADNEDVKEFYLGVSGAGRKNFRDMKFYRRRKRWLA 288 NGRVVMEGAASELADNEDVKEFYLGVSGAGRKNFRDMKFYRRRKRWLA Sbjct: 241 NGRVVMEGAASELADNEDVKEFYLGVSGAGRKNFRDMKFYRRRKRWLA 288 >gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 257 bits (656), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 168/240 (70%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L I IEV Y +L L+ VSL+V G I ALLGANGAGKSTTLKA+SNLL A+RG V Sbjct: 6 LQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQVRA 65 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 G I + G V R +P +LV++G+ QV+EGRHCF LTVEENLLTG ++ L Sbjct: 66 GHILYEGREVGRSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTVLRAAL 125 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 E+IYA+FP+L RR+S +G SGGEQQM AIGRA++++P +++LDEPSMGLAP++V +IF Sbjct: 126 ERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVADIF 185 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 + LN +E V+ L+AEQN+ VAL+YA +LE+GR V+ A L D++ FY G Sbjct: 186 AQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDEAQALRQRADIQSFYFG 245 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 221 bits (562), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 161/240 (67%), Gaps = 8/240 (3%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L + ++ V Y H+ V KG+SL + EG I AL+GANGAGKST+L AIS L+ A+RG V Sbjct: 11 LQVEDLAVAYGHIEAV-KGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL- 68 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 G+ + +M+P+ +V+ GV+QV EGR LTVEENL GAYTR V +L Sbjct: 69 ----LHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDG-VARDL 123 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 E +Y+ FP LK R +G SGGEQQM AIGRA+MAKP ++LLDEPSMGLAP I++EIF Sbjct: 124 EWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIF 183 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 IV+++N K ++ LL EQN ALR A GY+LE G++V+E + + L N V E YLG Sbjct: 184 RIVQEIN-KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 6/240 (2%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L + + V Y I +KG+ L+V EG +V L+GANGAGK+TTLKAI+ L A R + Sbjct: 6 LKVQQLSVAYGG-IQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASR---VE 61 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 G IE+ G+ + +LVK + V EGR F ++++ENLL GAYT ++ ++ Sbjct: 62 GHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSD-DKGQIAADI 120 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 +K +A FPRLK R +G SGGEQQM A+ RA+M+ P ++LLDEPSMGL+P +VE+IF Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 E+++++ S + ++ LL EQN +AL A GY++E+G + M+G A ++ D+ VK YLG Sbjct: 181 EVIRNV-SAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 6/240 (2%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L + + V Y I +KG+ L+V EG +V L+GANGAGK+TTLKAI+ L A R + Sbjct: 6 LKVQQLSVAYGG-IQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASR---VE 61 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 G IE+ G+ + +LVK + V EGR F ++++ENLL GAYT ++ ++ Sbjct: 62 GHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSD-DKGQIAADI 120 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 +K +A FPRLK R +G SGGEQQM A+ RA+M+ P ++LLDEPSMGL+P +VE+IF Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 E+++++ S + ++ LL EQN +AL A GY++E+G + M+G A ++ D+ VK YLG Sbjct: 181 EVIRNV-SAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 805,459 Number of extensions: 32604 Number of successful extensions: 465 Number of sequences better than 1.0e-08: 114 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 124 Length of query: 288 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 204 Effective length of database: 1,222,130 Effective search space: 249314520 Effective search space used: 249314520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)