BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2596.p
         (354 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311873|ref|YP_003775965.1| poly(3-hydroxybutyrate) depolym...   557   e-160

>gi|300311873|ref|YP_003775965.1| poly(3-hydroxybutyrate)
           depolymerase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score =  557 bits (1436), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/317 (85%), Positives = 290/317 (91%), Gaps = 2/317 (0%)

Query: 2   RRLLLAALCGCSLLSALP--ANAVDLSLKTIRVGNLARAYFSERNSIGEPRPLIIALHAS 59
           RR L+A L G  L  A P  A AVDLSLKTIRVGNL+RAYFSER S+GE RPLIIALHAS
Sbjct: 23  RRGLMACLLGLGLGVAAPPSAQAVDLSLKTIRVGNLSRAYFSERTSVGEARPLIIALHAS 82

Query: 60  GSSGSLMARATGLTEIAEAAGYMIVYPNGTGLAIDARTWNSGGCCGYAQMHKVDDVAFLR 119
           GSSGSLMARATGLTEIAEAAGYMI YPNGTGLAIDARTWNSGGCCGYAQMHKVDDVAFLR
Sbjct: 83  GSSGSLMARATGLTEIAEAAGYMIAYPNGTGLAIDARTWNSGGCCGYAQMHKVDDVAFLR 142

Query: 120 ALIDKLVKDGLADPQRVYLVGVSNGGMMAYRMAAEAPELFKAVAVVSAVLDVPPETVKAP 179
           AL++KL KDGLADPQRVYLVGVSNGGMMAYRMAAEAP LFKAVAVVSAVLDVPPETVKAP
Sbjct: 143 ALVEKLAKDGLADPQRVYLVGVSNGGMMAYRMAAEAPGLFKAVAVVSAVLDVPPETVKAP 202

Query: 180 MPLLHIHGSDDPFIPFLGGIGKQEVSQLPRLSVARSIEAFIKADGAAPRPSVTDIPDTAN 239
           MP+LHIHGS+DPFIPFLGGIGKQEVSQLPRLSVAR+IE ++KA+GA PRP+VTDI DTAN
Sbjct: 203 MPVLHIHGSEDPFIPFLGGIGKQEVSQLPRLSVARTIETWVKANGAEPRPAVTDIADTAN 262

Query: 240 DGTTIRQYTYASKTDPQAVVLYEVKGGGHAWPGGVVPIINGGKSSQNLDTSRTVINFFNA 299
           DGTTIRQYTY SKTDPQ+VVLYEVKGGGHAWPG V+PIINGGKSSQN+D SRTV+ FFNA
Sbjct: 263 DGTTIRQYTYRSKTDPQSVVLYEVKGGGHAWPGAVIPIINGGKSSQNMDASRTVVEFFNA 322

Query: 300 HGGGRKSEPEDDDLPPG 316
           HGGGR  E  D++LPPG
Sbjct: 323 HGGGRSDEAVDENLPPG 339


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,031,258
Number of extensions: 45510
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,212,660
Effective search space: 324992880
Effective search space used: 324992880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)