BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2588.p (1238 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 2194 0.0 gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 1365 0.0 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 2194 bits (5685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1067/1184 (90%), Positives = 1119/1184 (94%), Gaps = 4/1184 (0%) Query: 55 LPTVCAHSTDTVADTSGLAPVSLDDKYTATAGSIYLSGIQALVRLPMLQQIRDRAAGLNT 114 +PTV A STD V LAPVSLDDKYTAT G+IYLSGIQALVRLP+LQQIRDRAAGLNT Sbjct: 1 MPTVLASSTDDVP----LAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNT 56 Query: 115 AGFISGYRGSPLGGLDEALWQAQPHLAAQRVKFQPGVNEDMAATAVWGTQQIKLIGPSDY 174 AGFISGYRGSPLGGLDEALW AQPHLAA RVKFQPGVNEDMAATAVWGTQQ+KLIGPSDY Sbjct: 57 AGFISGYRGSPLGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDY 116 Query: 175 DGVYAMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSA 234 DGVYAMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSA Sbjct: 117 DGVYAMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSA 176 Query: 235 SMIPMLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDANPLRVEIRLPT 294 SMIPMLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDA+P RV+IRLP+ Sbjct: 177 SMIPMLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPS 236 Query: 295 DFVMPPGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANQLNRVMIDSPRARLGI 354 DFVMP GGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARAN+LNRVMIDSP+ARLGI Sbjct: 237 DFVMPEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGI 296 Query: 355 IASGKSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPEGVREFAQGLDEILVVEE 414 IASGKSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEP+GVREFAQGLDEILVVEE Sbjct: 297 IASGKSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEE 356 Query: 415 KRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAA 474 KRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAA Sbjct: 357 KRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAA 416 Query: 475 RIARFHTSDLIKARLAFLDAKDAVLTKAVNTPPRPAYYCSGCPHNTSTRVPEGSFALAGI 534 RIARFHTSDLIKARLAFLDAKDAVL+KAVNTPPRPAYYCSGCPHN+STRVPEGSFALAGI Sbjct: 417 RIARFHTSDLIKARLAFLDAKDAVLSKAVNTPPRPAYYCSGCPHNSSTRVPEGSFALAGI 476 Query: 535 GCHVMATAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAV 594 GCHVMATAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAV Sbjct: 477 GCHVMATAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAV 536 Query: 595 AAKVNITYKILYNDAVAMTGGQPVDGTISVPMIAQQMAAEGVQRIALVSEDIARYAERTQ 654 AAKVN+TYKILYNDAVAMTGGQPVDGT+SVPMIAQQMAAEGVQRIALVSED RYA+R+ Sbjct: 537 AAKVNMTYKILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSS 596 Query: 655 LPSIVSVHDRQQMDAVQRELREWPGVSVIIYDQTCAAEKRRRRKKGQLPDPDERLFINSA 714 LP+ V+VHDR+ MDAVQRELRE PGV+VIIYDQTCAAEKRRRRKKG PDP++RLFIN+A Sbjct: 597 LPAAVTVHDRKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAA 656 Query: 715 VCEGCGDCGTQSNCTAILPLETELGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLKKS 774 VCEGCGDCG QSNCT+ILPLET+LGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKL+KS Sbjct: 657 VCEGCGDCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKS 716 Query: 775 RTGTTRQGAEYDFGPLPQPVLPSCDTPFNILINGIGGTGVITIGALMGMAAHLEGKGVSV 834 RTG +RQ DFG LPQPVLP+CDTPFNILINGIGGTGVITIGALMGMAAHLEGKG SV Sbjct: 717 RTGVSRQEERDDFGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASV 776 Query: 835 LDMTGMSQKNGSVTSHVRIAARREAIGAQRIATGEADLVLGCDMLTAGAFDAISKMRPGR 894 LDMTGMSQKNGSVTSHVRIAARR+AI AQRIATGEADLVLGCDMLTAGAFDAISKMRPGR Sbjct: 777 LDMTGMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGR 836 Query: 895 TRAVVNLHQQPPGQFARNPDWQFPLEEVKALIIESVGQQADFIDATRLATALMGDAIATN 954 TRAVVNLHQQPPGQFARNPDW+FP+EEVKALI+ESVGQQADFIDATRLATALMGD+IATN Sbjct: 837 TRAVVNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQQADFIDATRLATALMGDSIATN 896 Query: 955 LFMLGYAWQRGELPLTEAALLRAIELNGVAVQANQSAFGWGRRAAVDLLKVENIAVPAQP 1014 LFMLGYAWQRGELPLTEA+LLRAIELNGVAVQAN++AF WGRRAAVDL +VE IAVPAQP Sbjct: 897 LFMLGYAWQRGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIAVPAQP 956 Query: 1015 VVLHMPLSLEQWIKRSVALLTDYQDAAYAAQYAEVVEAVHAAEAPLGSDKLSMTVARQLS 1074 V+LH+P SL+Q IKR V+LLTDYQDAAYAAQ+ EVVEAV AAEA LGSDKL+ VAR LS Sbjct: 957 VLLHLPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSDKLATAVARNLS 1016 Query: 1075 RLMAYKDEYEVARLYTNGQFQQALAQQFEGDFTLSFHLAPPVLARKDGQGHLLKARYGGW 1134 RLMAYKDEYEVARLYTNGQFQ+ LAQQFEGDF+LSFHLAPP+LARKDGQGHLLKARYGGW Sbjct: 1017 RLMAYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLLKARYGGW 1076 Query: 1135 MMTAFKLLARMKGLRGGVLDVFGRTAERRMERALIVQYRSLVLGLLPRLTTDNLPTAIEL 1194 +M AFKLLARMKGLRGG+LD+FG T ERRMER LIVQYR LVL LLPRLT NL TAIEL Sbjct: 1077 VMQAFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAANLATAIEL 1136 Query: 1195 AQLPELVRGYGHVKQQAVEHMHARQASLLAAFERAGQPSVEAAA 1238 AQLPE VRGYGHVK +AV M RQ LLA F +AGQ +E AA Sbjct: 1137 AQLPEQVRGYGHVKLKAVHAMRTRQQQLLAVFAQAGQSRLEEAA 1180 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 1365 bits (3532), Expect = 0.0, Method: Compositional matrix adjust. Identities = 683/1174 (58%), Positives = 850/1174 (72%), Gaps = 36/1174 (3%) Query: 80 KYTATAGSIYLSGIQALVRLPMLQQIRDRAAGLNTAGFISGYRGSPLGGLDEALWQAQPH 139 KYT G ++++GIQALVRLPMLQ+ D+ AGLNTAGFI+GYRGSPLG +D+ +A+ + Sbjct: 21 KYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQTAEKARKY 80 Query: 140 LAAQRVKFQPGVNEDMAATAVWGTQQIKLIGPSDYDGVYAMWYGKGPGVDRCGDVLKHMN 199 L A+++KF PG+NED+AAT+VWGTQQ+ L + YDGV+++WYGKGPGVDRCGDV KH N Sbjct: 81 LEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRCGDVFKHAN 140 Query: 200 HAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDLGLHGWAMS 259 AGTS HGGVL++AGDDH A SST HQS+HI A IP+LYP +VQEYLD GLHGWAMS Sbjct: 141 MAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMS 200 Query: 260 RYSGCVVGFKALADTVESSASVDANPLRVEIRLPTDFVMPPGGLNARLSTDTLGVQARKQ 319 RY+G V K + D VES SV +P RV+I+LP DF +PP GLN R LG Q Sbjct: 201 RYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTVLG-----Q 255 Query: 320 EALMQDYKIYAALAYARANQLNRVMIDSPRARLGIIASGKSYLDVLEALSELGIDEAFAA 379 EA M +YK YAALAYARAN+LNR++ DSPRAR+GII +GKSYLD +AL +LGIDE A Sbjct: 256 EARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAAR 315 Query: 380 EIGLRLFKVSMPWPLEPEGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVI 439 +IG+RL+KV M WPLE EGVREFAQGLDEILVVEEKRQ++EYQLKE+LYNWRDDVRPRV+ Sbjct: 316 DIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVV 375 Query: 440 GKFDEKGEWVAPR----GEWLLTSKADFSVAQIARVIAARIARFH----TSDLIKARLAF 491 GKFD+ GEW + G WLL + + + AQIAR IA RI+R+ ++AR+A+ Sbjct: 376 GKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARVAY 435 Query: 492 LDAKDAVLTKAVNTPP---RPAYYCSGCPHNTSTRVPEGSFALAGIGCHVMATAIYPEFN 548 L+AK+A L + P R ++CSGCPHNTST++PEGS LAGIGCH M T + E Sbjct: 436 LEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMDRE-T 494 Query: 549 KLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNITYKILYND 608 KL THMGGEG W+GQAPF+ HVFANLGDGTYFHSG LA+RA+VAAKVNITYKILYND Sbjct: 495 KLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYKILYND 554 Query: 609 AVAMTGGQPVDGTISVPMIAQQMAAEGVQRIALVSEDIARYAERTQLPSIVSVHDRQQMD 668 AVAMTGGQ DG + MI++Q+AAE V+ I +V+++ +Y TQ V++ R ++D Sbjct: 555 AVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGVTIRHRSELD 614 Query: 669 AVQRELREWPGVSVIIYDQTCAAEKRRRRKKGQLPDPDERLFINSAVCEGCGDCGTQSNC 728 AVQRELRE PGVS +IYDQTCA+EKRRRRK+ PDP +R IN AVCEGCGDC QSNC Sbjct: 615 AVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEGCGDCSVQSNC 674 Query: 729 TAILPLETELGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLKKSRTGTTRQGAEYDFG 788 ++ PLETE GRKR I+QSSCNKDYSCV GFCPSFVTV GG+LKK A+ D G Sbjct: 675 LSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPAR------AQADVG 728 Query: 789 P----LPQPVLPSCDTPFNILINGIGGTGVITIGALMGMAAHLEGKGVSVLDMTGMSQKN 844 P LP+PVLP P+ IL+ G+GGTGVITIG ++ MAAH+EG+ SVLDM+G++QK Sbjct: 729 PALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKG 788 Query: 845 GSVTSHVRIAARREAIGAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQ 904 G V SHVR+A I + R+ TG ADLV+GCD++ + DA+S+M GRT A VN Q Sbjct: 789 GPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTHAAVNSTQM 848 Query: 905 PPGQFARNPDWQFPLEEVKALIIESVGQ-QADFIDATRLATALMGDAIATNLFMLGYAWQ 963 P F RNPDWQFP + I + G+ +DA R+ATALMGDAIATN+FMLGYAWQ Sbjct: 849 PTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNMFMLGYAWQ 908 Query: 964 RGELPLTEAALLRAIELNGVAVQANQSAFGWGRRAAVDLLKVENIA----VPAQPVVLHM 1019 +G +PL+EAALLRAIELN + V+ N+ AF WGR AA D+ V A + AQ + Sbjct: 909 KGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMSAQVIEFKR 968 Query: 1020 PLSLEQWIKRSVALLTDYQDAAYAAQYAEVVEAVHAAEAPLGSD----KLSMTVARQLSR 1075 +L++ ++R VA LTDY +AAYA Y + VE V A E+ LG KLS VA L + Sbjct: 969 TPTLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRGLKLSRAVASYLFK 1028 Query: 1076 LMAYKDEYEVARLYTNGQFQQALAQQFEGDFTLSFHLAPPVLARKDGQGHLLKARYGGWM 1135 LMAYKDEYEVARL+ + F+ +A FEGD+ L FHLAPP+LA++D +GHL K +G WM Sbjct: 1029 LMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLRKQAFGSWM 1088 Query: 1136 MTAFKLLARMKGLRGGVLDVFGRTAERRMERALIVQYRSLVLGLLPRLTTDNLPTAIELA 1195 M F +LAR++ LRG LD F T ERR ERALI +YR+ + LL RLT +NL +A Sbjct: 1089 MPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRLTPENLEQITAVA 1148 Query: 1196 QLPELVRGYGHVKQQAVEHMHARQASLLAAFERA 1229 ++PE +RGYGHVK++ ++ +QA+LLA +A Sbjct: 1149 RIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQA 1182 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,813,962 Number of extensions: 163394 Number of successful extensions: 521 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 514 Number of HSP's successfully gapped: 2 Length of query: 1238 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1142 Effective length of database: 1,165,310 Effective search space: 1330784020 Effective search space used: 1330784020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)