BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2584.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311862|ref|YP_003775954.1| IAA acetyltransferase [Herbaspi...   288   1e-79

>gi|300311862|ref|YP_003775954.1| IAA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  288 bits (737), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 136/160 (85%), Positives = 149/160 (93%)

Query: 1   MIEILAFAPQHAQGVVDLILPIQQQEFDIPITLEGQPDLKDIAGFYQKGLGNFWVALDAG 60
           MI+I AF+P+HA GVV++ILPIQQQEF+IPITLEGQPDLKDI GFYQKG GNFWVALDAG
Sbjct: 4   MIQIHAFSPEHASGVVEVILPIQQQEFEIPITLEGQPDLKDIPGFYQKGRGNFWVALDAG 63

Query: 61  KVVGSISLLDIGNQQVALRKMFVAASHRGKEHGTAVRLLEGALAWAREQGVRQVFLGTTA 120
           KVVG+I+LLDIGN+QVALRKMFVAASHRG+EHGTA RLLEGA+AWAR QGVRQ+FLGTTA
Sbjct: 64  KVVGTIALLDIGNEQVALRKMFVAASHRGREHGTAARLLEGAVAWARAQGVRQIFLGTTA 123

Query: 121 KFLAAHRFYEKNGFRLIEKSDLPAAFPVMTVDTRFYALDC 160
           KFLAAHRFYEKNGFR I +  LPAAFPVM VDTRFYALDC
Sbjct: 124 KFLAAHRFYEKNGFRQIAQETLPAAFPVMVVDTRFYALDC 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 527,532
Number of extensions: 22341
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)