BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2583.p
         (321 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311861|ref|YP_003775953.1| succinylglutamate desuccinylase...   543   e-156

>gi|300311861|ref|YP_003775953.1| succinylglutamate desuccinylase
           [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score =  543 bits (1400), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/321 (80%), Positives = 286/321 (89%)

Query: 1   MSAPFPSSLQRLQYAAFAPGPRLLILGAVHGNETCGTQAIGRLQRELDSGRLRIQRGLLT 60
           MS   PSSLQR QYAAF PGPRLL+LGAVHGNETCGTQAI RL++ELDSG+L + RGLLT
Sbjct: 1   MSTLLPSSLQRFQYAAFQPGPRLLVLGAVHGNETCGTQAITRLRQELDSGQLHLVRGLLT 60

Query: 61  LVPVTNPLAYQLQQRQGERNLNRNLRAHPAPANFEDQLCNLLCPWIDEHDVLLDLHSFHT 120
           LVPVTNPLAY   QRQGERNLNRNLR HP PANFED+LCN+LCPWIDEH+VLLDLHSFHT
Sbjct: 61  LVPVTNPLAYARHQRQGERNLNRNLRPHPDPANFEDRLCNVLCPWIDEHEVLLDLHSFHT 120

Query: 121 GGQPFAMLGPEDNHDDIEPFAHAAAEQRMVAHLGCQRVVEGWMGAYVRGVERRRQQGRVM 180
           GG PFAMLGP+DN  ++EPFA AAAEQRMVAHLGCQRVVEGWM AYVRGV+RRRQQGR +
Sbjct: 121 GGVPFAMLGPQDNTGEVEPFALAAAEQRMVAHLGCQRVVEGWMSAYVRGVQRRRQQGRAV 180

Query: 181 SPDLLDRQYGVGTTEYARSKGLYGVTLECGQHDDPQAPEVAYRAILQTLALHDMIDLPLQ 240
           SPDLLD QYGVGTTEYAR +GLYGVTLECGQHDDPQAPEVAY+AI QTLALH MI+ PL 
Sbjct: 181 SPDLLDTQYGVGTTEYARGRGLYGVTLECGQHDDPQAPEVAYQAIRQTLALHGMIEAPLA 240

Query: 241 PPVADIQLIRLVDVIDMEHPQDRFSRDWSSFDRVQQGEVIGHRHDGQAVIAPAAGYIVFP 300
           PP   I++IRLVDVIDM+HP+DRF R+W+SFDRV+ GE+IGHRHDG AV AP  GYIVFP
Sbjct: 241 PPADGIEIIRLVDVIDMDHPEDRFLREWASFDRVRAGELIGHRHDGAAVTAPGDGYIVFP 300

Query: 301 NPRALPGNEWFYFGEDSQRKL 321
           NPRALPGNEWFYFG DS+R+L
Sbjct: 301 NPRALPGNEWFYFGVDSERRL 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,138,957
Number of extensions: 49615
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,217,395
Effective search space: 287305220
Effective search space used: 287305220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)