BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2582.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311860|ref|YP_003775952.1| hypothetical protein Hsero_2545...   435   e-123

>gi|300311860|ref|YP_003775952.1| hypothetical protein Hsero_2545
           [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  435 bits (1119), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/299 (73%), Positives = 252/299 (84%)

Query: 11  LPDVAREERPAIALPLEWVGMRGIALPLQLDSGKTVAASAEVAVDLPDPHAKGIHMSRLY 70
           LPDVAREER +IALPL+WVGM GIALP++LD+G+ V ASAE+AVDLP   AKGIHMSRLY
Sbjct: 5   LPDVAREERASIALPLDWVGMCGIALPVRLDNGQIVPASAEIAVDLPHAQAKGIHMSRLY 64

Query: 71  LLLDTFASRARLTPVALHELLRQLRESHADCHSRAAALRLDFALLQQRAALVTPDLDGWK 130
           LLLD FA++A L P ALH LL Q+R SHADC SRAA+LRLDFALL QRAALVTP L GWK
Sbjct: 65  LLLDRFAAQATLNPAALHALLDQMRASHADCGSRAASLRLDFALLHQRAALVTPALAGWK 124

Query: 131 SYPVTLSAELHDDVLEISLRVSIAYSSTCPCSAALSRQALQDAFAQAFAGQPAIEREAAL 190
           SYP TL+AEL  D L ++L+V IAYSSTCPCSAALSRQALQDAFA  F    ++ + A L
Sbjct: 125 SYPFTLAAELQQDRLHLTLQVRIAYSSTCPCSAALSRQALQDAFASEFGPHTSVAQPAVL 184

Query: 191 AWLQRNASLATPHSQRSQAELSINVSPKAEQLPIAALIDTAEAALGTAVQTAVRRADEQA 250
            WL R+ S ATPHSQRS A+L + V+ +A +LP+ ALIDTAE ALGTAVQTAVRRADEQA
Sbjct: 185 DWLARHGSRATPHSQRSYADLGVTVAQEAAELPLLALIDTAEQALGTAVQTAVRRADEQA 244

Query: 251 FALANGANLMYVEDAARRLRQALETRFGACAVRVAHLESLHAHDAVAATATPGWQDRVR 309
           FALANGANLMYVEDAARRLRQA+E RFGACA+RV+H+ESLHAHDAVAATA+PGW  ++R
Sbjct: 245 FALANGANLMYVEDAARRLRQAVEARFGACAIRVSHVESLHAHDAVAATASPGWSGQLR 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 829,671
Number of extensions: 28855
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)